DY262662

Overview
NameDY262662
Unique NameDY262662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length971
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.139e-18
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  157 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            K E +  + +M   R  E +C  +Y +  + GF HLY GQEAV  G    + K+D +++ YRDH + LS+G     + +EL    TGC +G+GGSMHMF+K    GN  +G    LG
Sbjct:   49 KDELISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAGLESAITKDDHIITAYRDHTYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTKNFYGGNGIVGAQCPLG 165          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ACOA_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoA PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.573e-17
Identity = 68/214 (31.78%), Postives = 99/214 (46.26%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRREGLKEADCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFFVEKNLWPMEGTI--*GLFQFPIFKKGPAFGIPGFSL*GRNF 783
            + K+  L +Y  M   R FE+     + RG + GFVHLY G+EA   G +  L   D + ST+R H H ++KGV   A+M E++G   G C G+GGSMH+       +G   +LG    L  G ++  K+R +G    +  +        N   G F E L    +   P  FV +N    E T    G        +   FGIPG ++ G +F
Sbjct:   14 LDKETLLTVYRKMRTIRDFEERLHVDFGRGDIPGFVHLYAGEEAAGVGILHHLNDGDRIASTHRGHGHCIAKGVDPVAMMKEIYGKKGGSCNGKGGSMHIADLSKGMMGANGILGAGAPLICGAALAAKFRGKG----EVGITFCGDGASN--QGTFLESLNLAAVWNLPVIFVIENNGYAESTSRDYGTAVDSYVDRAAGFGIPGVTVDGTDF 221          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.503e-17
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            +TK E L LYE M+  R  E  C  +Y   K+ GF HL  GQEAV+ G    +  +DS++++YR H  A ++G+  R+++ EL G   G  +G+GGSMH+F+K    GN  +G  + LG
Sbjct:   73 VTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGAQIPLG 191          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_SMIMA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.576e-17
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T++EGL+ Y+ M   R  E    Q+Y +  + GF HLY+GQEA   G    +   D V++ YR H    ++G+P R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   28 VLTREEGLKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAGINPTDHVITAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 147          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.331e-16
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRRE 546
            + QE L+ +  M L R  E + A   Y+ K+  GF HLY+GQEAV+ G    + K+D++++ YRDH   L +G     V SEL G   GC +G+GGSMH + K +   G   ++G    L  G +   KY +E
Sbjct:   55 SSQELLDFFRTMALMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPLGCGIAFAQKYNKE 186          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.874e-16
Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKG 462
            TK   L++Y+DMI+ R  E  C  +Y   K+ GF H   GQEA++ G    + K D+V+++YR H     +G   +AV++EL G  TG   G+GGSMH+++ G
Sbjct:   69 TKSNLLQMYKDMIIVRRMEMACDALYKAKKIRGFCHSSVGQEAIAVGIENAITKRDTVITSYRCHGFTYMRGAAVQAVLAELMGRRTGVSFGKGGSMHLYAPG 171          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.059e-16
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+P RA+++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.629e-16
Identity = 68/223 (30.49%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLGRDFHLYWGSIPPKYRREGLKEADCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFFV-EKNLWPMEGTI-*GLFQFPIFKKGPAFGIPGFSL*GRNFLEGKE 798
            ++T++E L+ Y +M + R  E    Q+Y +  + GF HL +GQEA + G    +   D ++++YR H    ++G+  +++++EL G   GC +G+GGSMHM++K    GN  +G  + LG        ++  KY    LK     L  +     N   G  FE      L   PC F+ E N + M   I          KKG  F IPG  + G + L  +E
Sbjct:   56 VLTREEALKYYRNMQVIRRMELKADQLYKQKFIRGFCHLCDGQEACNVGLEAGINPTDHIITSYRAHGLCYTRGLSVKSILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGV-----ALACKY----LKNGQICLALYGDGAAN--QGQVFEAYNMSALWKLPCVFICENNRYGMGTAIERSAASTDYHKKG--FVIPGLRVNGMDILSVRE 265          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.472e-15
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  169 LELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKG 462
            L++Y+DM++ R  E  C  +Y   K+ GF HL  GQEA++ G    + K DS++++YR H     +G   +AV++EL G   G   G+GGSMH+++ G
Sbjct:   82 LQMYKDMVIIRRMEMACDALYKAKKIRGFCHLSVGQEAIAVGIENAITKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYAPG 179          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.593e-15
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK 459
            ++T+ EGL+ Y  M+  R  E    Q+Y +  + GF HL +GQEA   G    +   D V+++YR H    ++G+  R++++EL G   GC +G+GGSMHM++K
Sbjct:   53 VLTRAEGLKYYRMMLTVRRMELKADQLYKQKFIRGFCHLCDGQEACCVGLEAGINPSDHVITSYRAHGVCYTRGLSVRSILAELTGRRGGCAKGKGGSMHMYTK 156          
The following BLAST results are available for this feature:
BLAST of DY262662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ODPA_DICDI4.139e-1839.32Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ACOA_RALEH1.573e-1731.78Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPA_SCHPO3.503e-1740.34Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SMIMA4.576e-1738.33Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA1_ARATH1.331e-1637.59Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_KLULA3.874e-1639.81Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE5.059e-1636.67Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_RAT8.629e-1630.49Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_YEAST1.472e-1538.78Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_HUMAN5.593e-1537.50Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262662 ID=DY262662; Name=DY262662; organism=Citrus clementina; type=EST; length=971bp
AATTCCTTGTTTGATCCTCTCAAAACCGGTACTTCTTTCCTTGGATCCAC
TCACAAACTCCGTGTTAATTCTGTTCACTCGAATCAGGGCAATGTTCGCC
GTCGACTTCCCGTCGTTGCTGTCTCTGAGGTTGTTAAGGAGAAGAAGCTG
ATCACCAAGCAAGAAGGCTTAGAGCTATATGAAGATATGATCCTTGGCAG
ATCTTTTGAGGACATGTGCGCCCAGATGTACTACAGAGGGAAAATGTTCG
GGTTTGTTCACCTCTACAATGGTCAAGAAGCTGTGTCAACTGGATTTATT
AAGCTCTTGAAGAAAGAAGATTCTGTGGTGAGCACATACCGTGATCACGT
GCATGCCCTGAGTAAAGGGGTCCCTGCTCGTGCTGTGATGAGTGAGCTCT
TTGGCAATGCCACTGGTTGCTGCAGGGGCCAAGGTGGATCTATGCACATG
TTCTCAAAGGGCAACATCTGCTTGGGGGTTTTGCTTTTATTGGGGAGGGA
CTTCCATTTGTACTGGGGCAGCATTCCCCCCAAGTATAGGAGGGAGGGGT
TGAAGGAGGCTGACTGTGATCTTGTGAATTGGCATTTTTTGCTGATGAAC
TTGAAACATGGCCCGTTCTTTGAATGCTTAACATGGCTGCTTTTGGAAAT
TTCCCCTTGTTTTTTTGTGGAAAAAAATTTGTGGCCTATGGAAGGTACAA
TTTAAGGCCTCTTTCAATTCCCAATTTTTAAAAAGGGCCCCGCTTTTGGG
ATTCCCGGTTTTTCCCTTTAGGGGAGGAATTTTTTGGAGGGGAAGGAGAG
GGGAATAAAAGAGGAATTTAAAAAACCCAGAAAAGGGAAAAAGAAACCTC
TTTGGGGGGAAAAGGAAAAAAAAATTAACTGTTTTAAAAAAAACACACTT
TTTGGGCCCACCCCCCCCCAGAACTTTTTTCTGTCCCCCGCCCCCCACAA
GAAGAGGAGCTCCCCTTATTT
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