DY262662

Overview
NameDY262662
Unique NameDY262662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length971
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.541e-15
Identity = 46/133 (34.59%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  154 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRRE 546
            + +E L  + DM   R  E + A   Y+ K+  GF HLY+GQEA++ G    + K+D+++++YRDH   + +G       SEL G  TGC  G+GGSMH + K     G   ++G    L  G +   KY ++
Sbjct:   59 SSEEILAFFRDMARMRRME-IAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIPLGCGLAFAQKYNKD 190          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.246e-14
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G   RA+++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFNRGHAVRAILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPAT_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Mus musculus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.246e-14
Identity = 59/186 (31.72%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLGRDFHLYWGSIPPKYRREGLKEADCDLVNWHFLLMNLKHGPFFECLTWLLLEISPCFFV-EKNLWPM 690
            ++T+ E L+ Y  M + R  E    Q+Y +  + GF HL +GQEA   G    +   D V+++YR H    ++G+  +++++EL G   GC +G+GGSMHM+ K    GN  +G  + LG        +   KY    LK     L  +     N   G  FE      L   PC F+ E NL+ M
Sbjct:   56 VLTRAEALKYYRTMQVIRRMELKADQLYKQKFIRGFCHLCDGQEACCVGLEAGINPTDHVITSYRAHGFCYTRGLSVKSILAELTGRKGGCAKGKGGSMHMYGKNFYGGNGIVGAQVPLGAGV-----AFACKY----LKNGQVCLALYGDGAAN--QGQVFEAYNMSALWKLPCVFICENNLYGM 230          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PONAB (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.627e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PANTR (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.627e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.627e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_BOVIN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.627e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLG 174          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.125e-14
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  160 QEGLELYEDMILGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSKGNICLGVLLLLGRDFHLYWG-SIPPKYRRE 546
            +E +  ++DM   R  E + A   Y+ K+  GF HLY+GQEAV+ G    + K+D +++ YRDH   L +G       +EL G   GC RG+GGSMH + K +   G   ++G    L  G +   KY++E
Sbjct:   59 KELMTFFKDMTEMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKKDCIITAYRDHCIFLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGGHGIVGAQVPLGIGLAFAQKYKKE 188          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PIG (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (Fragment) OS=Sus scrofa GN=PDHA1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.626e-14
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGSMHM++K    GN  +G  + LG
Sbjct:   54 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRRGGCGKGKGGSMHMYAKNFYGGNGIVGAQVPLG 173          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_MACFA (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.077e-14
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  148 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  R +++EL G   GC +G+GGS HM++K    GN  +G  + LG
Sbjct:   55 VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSTHMYAKNFYRGNGIVGAQVPLG 174          
The following BLAST results are available for this feature:
BLAST of DY262662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ODPA2_ARATH9.541e-1534.59Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_RAT1.246e-1435.83Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPAT_MOUSE1.246e-1431.72Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PONAB1.627e-1435.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PANTR1.627e-1435.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_HUMAN1.627e-1435.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_BOVIN1.627e-1435.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SOLTU2.125e-1435.88Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PIG3.626e-1435.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MACFA8.077e-1434.17Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262662 ID=DY262662; Name=DY262662; organism=Citrus clementina; type=EST; length=971bp
AATTCCTTGTTTGATCCTCTCAAAACCGGTACTTCTTTCCTTGGATCCAC
TCACAAACTCCGTGTTAATTCTGTTCACTCGAATCAGGGCAATGTTCGCC
GTCGACTTCCCGTCGTTGCTGTCTCTGAGGTTGTTAAGGAGAAGAAGCTG
ATCACCAAGCAAGAAGGCTTAGAGCTATATGAAGATATGATCCTTGGCAG
ATCTTTTGAGGACATGTGCGCCCAGATGTACTACAGAGGGAAAATGTTCG
GGTTTGTTCACCTCTACAATGGTCAAGAAGCTGTGTCAACTGGATTTATT
AAGCTCTTGAAGAAAGAAGATTCTGTGGTGAGCACATACCGTGATCACGT
GCATGCCCTGAGTAAAGGGGTCCCTGCTCGTGCTGTGATGAGTGAGCTCT
TTGGCAATGCCACTGGTTGCTGCAGGGGCCAAGGTGGATCTATGCACATG
TTCTCAAAGGGCAACATCTGCTTGGGGGTTTTGCTTTTATTGGGGAGGGA
CTTCCATTTGTACTGGGGCAGCATTCCCCCCAAGTATAGGAGGGAGGGGT
TGAAGGAGGCTGACTGTGATCTTGTGAATTGGCATTTTTTGCTGATGAAC
TTGAAACATGGCCCGTTCTTTGAATGCTTAACATGGCTGCTTTTGGAAAT
TTCCCCTTGTTTTTTTGTGGAAAAAAATTTGTGGCCTATGGAAGGTACAA
TTTAAGGCCTCTTTCAATTCCCAATTTTTAAAAAGGGCCCCGCTTTTGGG
ATTCCCGGTTTTTCCCTTTAGGGGAGGAATTTTTTGGAGGGGAAGGAGAG
GGGAATAAAAGAGGAATTTAAAAAACCCAGAAAAGGGAAAAAGAAACCTC
TTTGGGGGGAAAAGGAAAAAAAAATTAACTGTTTTAAAAAAAACACACTT
TTTGGGCCCACCCCCCCCCAGAACTTTTTTCTGTCCCCCGCCCCCCACAA
GAAGAGGAGCTCCCCTTATTT
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