DY262662

Overview
NameDY262662
Unique NameDY262662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length971
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.055e-13
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            + +++ L+ Y DM + R  E     +Y   K+ GF HLY+GQEA + G    + + D+V++ YR H      G     V++EL G   G   G+GGSMHM++K    GN  +G    LG
Sbjct:   50 LNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGSMHMYTKNFYGGNGIVGAQQPLG 168          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.378e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  163 EGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK 459
            E L  +  M L R  E     +Y    + GF HLY+GQEAV+ G      K+D +++ YRDH   L +G     V +EL G   GC +G+GGSMH + K
Sbjct:   66 ELLSFFRTMALMRRMEIAADSLYKANLIRGFCHLYDGQEAVAVGMEAGTTKKDCIITAYRDHCTFLGRGGTLLRVYAELMGRRDGCSKGKGGSMHFYKK 164          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.799e-13
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLG 495
            +TK++ L  Y  M   R  E     +Y   K+ GF HLY+GQEA + G    ++  D+ ++ YR H      G P   V+ EL G  TG   G+GGSMHM+ +    GN  +G    LG
Sbjct:   47 VTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHLYSGQEACAVGMKAAMEPGDAAITAYRCHGWTYLSGSPVAKVLCELTGRITGNVYGKGGSMHMYGENFYGGNGIVGAQQPLG 165          
BLAST of DY262662 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.235e-13
Identity = 46/136 (33.82%), Postives = 65/136 (47.79%), Query Frame = 1
Query:  151 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGNATGCCRGQGGSMHMFSK----GNICLGVLLLLGRDFHLYWGSIPPKYRRE 546
            +TK++ +  Y  M+  R  E     +Y   K+ GF HLY+GQEA + G    +   D+ V+ YR H      G     V+ EL G  TG   G+GGSMHM+ +    GN  +G    LG        +   KYR+E
Sbjct:   52 VTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLYSGQEACAVGTKAAMDAGDAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNVYGKGGSMHMYGENFYGGNGIVGAQQPLGTGI-----AFAMKYRKE 182          
The following BLAST results are available for this feature:
BLAST of DY262662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ODPA_CAEEL1.055e-1335.29Probable pyruvate dehydrogenase E1 component subun... [more]
ODPA_PEA1.378e-1339.39Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPT_ASCSU1.799e-1336.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ASCSU5.235e-1333.82Pyruvate dehydrogenase E1 component subunit alpha ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262662 ID=DY262662; Name=DY262662; organism=Citrus clementina; type=EST; length=971bp
AATTCCTTGTTTGATCCTCTCAAAACCGGTACTTCTTTCCTTGGATCCAC
TCACAAACTCCGTGTTAATTCTGTTCACTCGAATCAGGGCAATGTTCGCC
GTCGACTTCCCGTCGTTGCTGTCTCTGAGGTTGTTAAGGAGAAGAAGCTG
ATCACCAAGCAAGAAGGCTTAGAGCTATATGAAGATATGATCCTTGGCAG
ATCTTTTGAGGACATGTGCGCCCAGATGTACTACAGAGGGAAAATGTTCG
GGTTTGTTCACCTCTACAATGGTCAAGAAGCTGTGTCAACTGGATTTATT
AAGCTCTTGAAGAAAGAAGATTCTGTGGTGAGCACATACCGTGATCACGT
GCATGCCCTGAGTAAAGGGGTCCCTGCTCGTGCTGTGATGAGTGAGCTCT
TTGGCAATGCCACTGGTTGCTGCAGGGGCCAAGGTGGATCTATGCACATG
TTCTCAAAGGGCAACATCTGCTTGGGGGTTTTGCTTTTATTGGGGAGGGA
CTTCCATTTGTACTGGGGCAGCATTCCCCCCAAGTATAGGAGGGAGGGGT
TGAAGGAGGCTGACTGTGATCTTGTGAATTGGCATTTTTTGCTGATGAAC
TTGAAACATGGCCCGTTCTTTGAATGCTTAACATGGCTGCTTTTGGAAAT
TTCCCCTTGTTTTTTTGTGGAAAAAAATTTGTGGCCTATGGAAGGTACAA
TTTAAGGCCTCTTTCAATTCCCAATTTTTAAAAAGGGCCCCGCTTTTGGG
ATTCCCGGTTTTTCCCTTTAGGGGAGGAATTTTTTGGAGGGGAAGGAGAG
GGGAATAAAAGAGGAATTTAAAAAACCCAGAAAAGGGAAAAAGAAACCTC
TTTGGGGGGAAAAGGAAAAAAAAATTAACTGTTTTAAAAAAAACACACTT
TTTGGGCCCACCCCCCCCCAGAACTTTTTTCTGTCCCCCGCCCCCCACAA
GAAGAGGAGCTCCCCTTATTT
back to top