DY262665

Overview
NameDY262665
Unique NameDY262665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1347
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262665 vs. ExPASy Swiss-Prot
Match: CAF40_YEAST (Protein CAF40 OS=Saccharomyces cerevisiae GN=CAF40 PE=1 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 2.434e-81
Identity = 162/261 (62.07%), Postives = 190/261 (72.80%), Query Frame = 1 
Query:  172 HLVLDLSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAAL-AEQPSSRLLKHIIRCYLRLSDNPRACDALXSCLPNMLRDASFSSCLREDPTQGDGCNSCLIML 951
            H +  L+    +E ALLEL +KRE F DLA +LW+SFG + +LL EI+S+YP+L P  L+   SNRVCNAL LLQCVASHP+T+ LFL AHIPL+L+PFLNTTS+ R FEYLRLTSLGVIGALVK D  +VI+FLL T+I+PLCLR ME  SELSKTVA FI+QKILLDDVGL YIC T ERF+AV  VL +MV  L    P  RLLKHIIRCYLRLSD+  A   L   LP  LRD +F+  LR+D     G   CL  L
Sbjct:  108 HWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIISVYPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLRLSDDLEARRLLKIVLPAKLRDNTFTEVLRDDV----GSKRCLAQL 364
The following BLAST results are available for this feature:
BLAST of DY262665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAF40_YEAST2.434e-8162.07Protein CAF40 OS=Saccharomyces cerevisiae GN=CAF40... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CD08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262665 ID=DY262665; Name=DY262665; organism=Citrus clementina; type=EST; length=1347bp
AAGGTTACTTGCAGAAAAAGCGCAAGGAAGTTGAGTGAGAGAGAGAGAAT
GGCGAATCTGCCACAGTCGCTGTCGATGAACGTGCCGTTCGGCGGTGGGC
CCAGCGCTTCGAGCCCTAGCGCCCCTGCAGGAGCTGGAGCGAACAAGGAC
CGGAAAATGGCGTCAGCTGAACATTTGGTACTCGACCTAAGCAATCCTGA
TTTAAGAGAAAACGCTCTTCTTGAATTATCAAAGAAGAGAGAATTATTTC
AAGATTTGGCTCCCTTGTTGTGGAATTCTTTTGGTACTATTGCTGCATTA
TTACAGGAGATAGTATCAATATACCCTGTTCTATCACCACCAAACCTTAC
TCCTGCACAATCAAACCGAGTTTGCAATGCACTTGCTCTTCTTCAGTGTG
TAGCCTCCCATCCAGACACAAGGATGTTGTTTCTCAATGCTCATATACCA
TTGTATTTGTACCCTTTCCTGAATACAACAAGCAAGTCAAGGCCCTTTGA
GTACTTGAGACTTACAAGCTTAGGTGTTATTGGTGCCCTGGTGAAGGTTG
ATGACACAGAAGTTATTAGCTTCCTTCTTTCAACAGAAATAATCCCACTC
TGCCTGCGGACCATGGAGATGGGCAGCGAGTTGTCAAAAACAGTTGCGAC
ATTTATAGTGCAGAAAATATTGTTAGATGATGTGGGCTTGGATTATATTT
GTACTACAGCAGAGAGGTTTTTTGCAGTAGGGCGAGTTTTGGGGAACATG
GTTGCGGCACTTGCTGAGCAACCTTCTTCGCGGCTGCTCAAGCATATTAT
TCGATGTTATCTGCGATTGTCAGACAATCCGAGGGCTTGTGATGCTCTAN
GAAGTTGCCTTCCAAACATGTTAAGAGATGCCAGCTTCAGTAGTTGCCTT
CGTGAAGATCCAACACAAGGAGATGGCTGCAACAGCTGCCTCATAATGTT
GGAGTCCATCGAGTTTCCACACTTCAGGTTGGAACACATTTTGATCATAT
GCTGGTGAACTGAATTGGAAGCAAGGCAATTTTTCAATCTATTTGATGCC
CAATATTGCCCGTTCAAACTGGCCCATCTAAGGCGAATTCAAACCTTTTC
CCCCTTTTTGGTTATTTCATTTTCGGGGGGTTAATGTTCGGAAATTAAGG
GGGGTTTTAAAAAAAAAACAGGGTAGGGGGGAAAAACAAAAAAATTGGGT
TAAACCCCGGGAATTTTCAATAACTTTTTCCCCCGCCCCTTTCTTTTTAA
CACAGAAAAATTTTTTGGAAAAAAACTTTTTTTTTGTTTTTTCGGTTGTG
GGGGGGGACCCTGGCCCCCCCAAAAAATTTTTTAAACAAAAAAATGT
back to top