DY262678

Overview
NameDY262678
Unique NameDY262678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length998
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 74/246 (30.08%), Postives = 103/246 (41.87%), Query Frame = 2
Query:  161 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 802
            ++R +WF       +LDG + GD GFDPLGL  P                              G ++P  L      +G       E+I+GR+AMLG  GAIA E L         T +AW   G +      +Y          TL  +E+ ++G+ E++R  +                       DP    YPGG  F+PLG   D   ++ L+L EIK+ RLAM+A L + IQA  TG GP
Sbjct:   51 ANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEG--------------------------TGGFIEPKWL-----AYG-------EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGP 250          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.030e-11
Identity = 63/226 (27.88%), Postives = 92/226 (40.71%), Query Frame = 2
Query:  176 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 802
            W PG   P +LDG++ GD GFDPL L +  E L++                                           F + ++++GRWAMLG  G +  E LT      AG +   E     G+   F+ ++      +   Y+E +R        +   DP+ +          YPG  F+PL  A     LEN +  E+ + RLAM+AFL F +Q    GKGP
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRW-------------------------------------------FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFA----PLENKE-KELANGRLAMLAFLGFLVQHNVHGKGP 208          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.998e-11
Identity = 48/113 (42.48%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  497 WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPG  FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGPI
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 124          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.114e-11
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  563 SLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805
            SL  ++  +V+++G +E  R     P      + RLYPGG FDPLGLA DP     L++ EIK+ RLAM   L F  QA  TG+GP+
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPV 96          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:   11 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847
            IW  +V+++G +E  R A     + V  LYPGG FDPLGLA DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
The following BLAST results are available for this feature:
BLAST of DY262678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB13_SOLLC5.838e-1530.08Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB120_HORVU1.030e-1127.88Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB22_PINSY2.998e-1142.48Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_EUGGR5.114e-1143.68Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2F_SOLLC8.723e-1143.62Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC8.723e-1143.62Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC8.723e-1143.62Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.723e-1143.62Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.723e-1143.62Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CE10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262678 ID=DY262678; Name=DY262678; organism=Citrus clementina; type=EST; length=998bp
ATCAGCGATGGCCACCACCACTACAGCAGCAGCATCACATTTCTTCGGGA
CGAGAATTCATGGGGCTGTCGTGAAACAAAGATCGGGAAAATTCCAAGCC
AGGTTCAGCTTTCGCAAGAAAAAATCCCCACCAGCCAAAAAGGCCAGGCC
TACACGAGACTCCGACCGGCTTGTCTGGTTCCCCGGCGCCACCCCGCCGG
AATGGCTCGACGGGACAATGGTGGGTGACCGTGGGTTCGACCCGTTGGGG
CTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTGACTCGTTGGATCA
GAACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGAGTGATTACTGATT
CCGGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACACGGAGGTATTTGGG
CTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGTT
GGGTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACTGGTGTCGCATGGC
AGGATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATCTTATCTTGGCCAA
CCACTTCCATTTTCATTAACAACATTGATTTGGATTGAAGTTATTGTGAT
TGGGTACATAGAATATCAAAGAAATGCAGAGCTTGATCCAGTGAAAAGAC
TATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGCCTCAGATCCTGGG
AAGCTTGAAAATCTTCAATTGGCTGAAATCAAGCACGCTCGTCTAGCAAT
GGTAGCATTTTTAATCTTTGGAATCCAGGCTGCTTTTACTGGCAAAGGGC
CCATCAGCTTTGTGGCTACATTTAACCAGTGACCCATTTCATAAAATTTC
ATGCCTTGGGTTCTCTTAATTAAGTAATTGTAAAATTCAATATCAATACT
TCACTATGGATGCTGCTACTTTTATATAATTATTGTATGTTATGTACTTG
GTCAGCCCAATTTCATATGTAAATCACTTTTCTTTTGAAAAAAAAAAA
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