DY262678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15 Identity = 74/246 (30.08%), Postives = 103/246 (41.87%), Query Frame = 2 Query: 161 SDRLVWFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL---------TGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQRNAEL----------------------DPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 802 ++R +WF +LDG + GD GFDPLGL P G ++P L +G E+I+GR+AMLG GAIA E L T +AW G + +Y TL +E+ ++G+ E++R + DP YPGG F+PLG D ++ L+L EIK+ RLAM+A L + IQA TG GP Sbjct: 51 ANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEG--------------------------TGGFIEPKWL-----AYG-------EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGP 250
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.030e-11 Identity = 63/226 (27.88%), Postives = 92/226 (40.71%), Query Frame = 2 Query: 176 WFPGATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVIVIGYIEYQR--------NAELDPVKRL---------YPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGP 802 W PG P +LDG++ GD GFDPL L + E L++ F + ++++GRWAMLG G + E LT AG + E G+ F+ ++ + Y+E +R + DP+ + YPG F+PL A LEN + E+ + RLAM+AFL F +Q GKGP Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRW-------------------------------------------FVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFA----PLENKE-KELANGRLAMLAFLGFLVQHNVHGKGP 208
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.998e-11 Identity = 48/113 (42.48%), Postives = 60/113 (53.10%), Query Frame = 2 Query: 497 WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805 W AG EG YLG P +++ I +V+++G IE R LDP LYPG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGPI Sbjct: 15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 124
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.114e-11 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 563 SLTTLIWIEVIVIGYIEYQRNAELDP------VKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 805 SL ++ +V+++G +E R P + RLYPGG FDPLGLA DP L++ EIK+ RLAM L F QA TG+GP+ Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPV 96
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847 IW +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A P++ N Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847 IW +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A P++ N Sbjct: 162 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847 IW +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A P++ N Sbjct: 11 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847 IW +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A P++ N Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of DY262678 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.723e-11 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2 Query: 578 IWI-EVIVIGYIEYQRNAEL---DPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 847 IW +V+++G +E R A + V LYPGG FDPLGLA DP L++ EIK+ RLAM + F +QA TGKGP+ +A P++ N Sbjct: 160 IWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253 The following BLAST results are available for this feature:
BLAST of DY262678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262678 ID=DY262678; Name=DY262678; organism=Citrus clementina; type=EST; length=998bpback to top |