DY262683

Overview
NameDY262683
Unique NameDY262683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1323
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.841e-23
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKET-SGQETVKLAIRAL 845
            + KI  +D+HI  A +GL ADARVL++RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL
Sbjct:   66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYAL 199          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.841e-23
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRAL 845
            + KI  +D+HI  A +GL ADARVL++RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E  +  E ++LA+ AL
Sbjct:   66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYAL 199          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.841e-23
Identity = 59/145 (40.69%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  420 IAFAYRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLE 851
            I +  +   K+  +  HI +  +G+  D RVLV RAR   Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D   G P L+Q+DPSG + AWKA A G+N  + + FLEK Y E    ++ +  AI  L E
Sbjct:   55 ILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKE 197          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.017e-23
Identity = 60/140 (42.86%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQET-VKLAIRALLEVS 857
            V KI   D+HI +A AG  ADAR L++ AR + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   I+E+LE++Y E+   E  + LA+ AL  V+
Sbjct:   66 VEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIE--DGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVN 203          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.553e-23
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS-GQETVKLAIRAL 845
            + KI  +D+HI  A +GL ADARVL++RAR+E Q +R++  + +TVE + + I  ++Q YTQ GG RPFGL+ LI G D ++    L++TDPSG    +KA A G       E LE  Y E     E ++LA+ AL
Sbjct:   66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA--RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYAL 199          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.553e-23
Identity = 61/138 (44.20%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLE 851
            V K+  +D+H+  A AG  ADAR LV+ AR + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   I+EFLE  Y    S  + + LA+RAL E
Sbjct:   66 VEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVE--GGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.553e-23
Identity = 61/138 (44.20%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-TSGQETVKLAIRALLE 851
            V K+  +D+H+  A AG  ADAR LV+ AR + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   I+EFLE  Y    S  + + LA+RAL E
Sbjct:   66 VEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVE--GGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.558e-23
Identity = 63/156 (40.38%), Postives = 92/156 (58.97%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQE-TVKLAIRALLEVSC*FSNVPVSNLGFVSL 905
            + KI  +D+HI  A +GL ADAR LV+RAR+E Q +R++ ++ + VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +YKE    E  + L + AL + +    +     +G VSL
Sbjct:   63 IEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKR--PRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSL 216          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.558e-23
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KETSGQETVKLAIRAL 845
            V KI   D+H+ +A AG  ADAR L++ AR + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE+NY +E S  E V LA+R +
Sbjct:   66 VEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIE--DGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTI 199          
BLAST of DY262683 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.460e-22
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 3
Query:  441 VRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 857
            V KI   D+HI +A AG  ADAR L++ AR + Q ++L   +PV VE +T+ I    Q+YTQ GG RPFG++ +I G     G P L++TDPSGT   WKA A G +   IR++LE++Y E     E V LA+ AL  V+
Sbjct:   66 VEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGI--VNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVN 203          
The following BLAST results are available for this feature:
BLAST of DY262683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSMA_METM73.841e-2343.38Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM53.841e-2343.38Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA2_XENLA3.841e-2340.69Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSMA_NATPD5.017e-2342.86Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_METM66.553e-2343.38Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_HALSA6.553e-2344.20Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS36.553e-2344.20Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_METTE8.558e-2340.38Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_HALWD8.558e-2344.85Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA1_HALMA1.460e-2245.00Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CF03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262683 ID=DY262683; Name=DY262683; organism=Citrus clementina; type=EST; length=1323bp
TTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAAGAGAAAATGGCTC
GATACGATCGCGCGATCACGGTCTTTTCTCCGGACGGCCATCTATTCCAA
GTCGAATACGCGCTCGAAGCCGTCCGTAAAGGAAACGCCGCCGTTGGGGT
CCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAAAAATCAGCCGTCA
AGCTCCAAGACTCCAGGTAGAAAACATACATTCGCGTAATTAATTATGTT
TAGGTTATATTTGAGCGCGAATTGATTCTGTAGGGTTAAGTTTCGGATTT
TGAATGTATAGTGATTTGTTGTAGTATTAGTTTTGATGAAAATAGCTGAT
TATCTTATAGTTGGGGCAATAATCAGTATAAGATTGTAATTTGCATGCCT
CCTTAGCTTCTGCTTGATTATTGCTTTTGCTTACAGAATGGTGAGGAAGA
TTGTGTCATTGGATAATCACATTGCGCTTGCCTGTGCGGGTCTGAAAGCG
GATGCACGTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAG
GCTTACTGTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTG
CTGGGCTTCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGT
CTTTCGACCTTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCGTCTCT
TTATCAGACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCA
CGGGAAGGAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAA
GAAACCTCTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGA
AGTAAGTTGCTAATTTTCGAATGTGCCTGTGTCTAACCTTGGCTTCGTAA
GTCTAATATGAAACTAGTCTTATCTAATGGCACTTTTCTGTGTTAGTAAA
TATGAGAATCTCTTTTAAATAAGGGTTTTCAAACCTAACCTACTTGGCCT
TTATATTTCAGTGGAGTTATTGTCTTTGAATTAGGAGAACGTTTCAAATA
ATGGTTAAGAAATTTTTCACCTTGTTGAAGGTTGAAAAACTAATTATTGG
GTGAACCCTTAAAAAATTCCGGAAGCCCCGGGCTAAACGGGGAACGGAAT
TTATGGGGGCCCTGGGCCGGATTTTCCCTTTGGAACGGAAGGGGTTAATT
GTCCAAAACCTTGGGAATTTGTTTTGAGAAAAACCTTTTTCCCCCCCCTT
TTCCGGTTTTTTCCACAAACACCCCCTCTTTATAAATAAAAAAAGAGAAA
AAGGGGAGGAAGAAAAGAGGGGG
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