DY262715

Overview
NameDY262715
Unique NameDY262715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1220
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_ERWT9 (Porphobilinogen deaminase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hemC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.498e-39
Identity = 96/225 (42.67%), Postives = 133/225 (59.11%), Query Frame = 2
Query:  323 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGE 997
            I+RI TR SPLAL QA   + +L+A HP L     ++++ + T GD IL  PLA +GGKGLF KE+++A+++   DIAVHSMKDVP   P    L    +RED  DAF+          P G+IVGT+SLRR+ Q+  R P L V+ + RGNV TRL KL+     A +LA+AGLKRL + + +  ++  ++ LPA   G    + C     +    L +LNH E
Sbjct:    5 ILRIATRRSPLALWQAEYVQRRLIACHPGLR----VELLPMVTRGDVILDTPLAKVGGKGLFVKELEQAMLSGSADIAVHSMKDVPVAFPPGLGLVAICEREDPHDAFVSHHYTSVDSLPQGAIVGTSSLRRQCQLSARRPDL-VIRSLRGNVGTRLGKLDAGEYDAIILAVAGLKRLGLGDRIRQVMPAEESLPAVGQGAV-GIECRLDDIQTIALLAALNHSE 223          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_VIBVY (Porphobilinogen deaminase OS=Vibrio vulnificus (strain YJ016) GN=hemC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.875e-39
Identity = 96/224 (42.86%), Postives = 129/224 (57.59%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGE 997
            IRI TR SPLAL QA+  ++ L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR+ Q+    P L V++  RGNV TRL KL+     A +LA AGLKRL + E + + +  +  LPA   G    + C    ++    LE LNH +
Sbjct:    7 IRIATRKSPLALWQAYYVKDALQKAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYHHVDELPQGAVVGTCSLRRQCQLKAYRPDL-VIKELRGNVGTRLSKLDAGEYDAIILAAAGLKRLELEERIRSFIEPEQSLPAVGQGAV-GIECRTNDERILKLLEPLNHAD 224          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_VIBVU (Porphobilinogen deaminase OS=Vibrio vulnificus GN=hemC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.875e-39
Identity = 96/224 (42.86%), Postives = 129/224 (57.59%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGE 997
            IRI TR SPLAL QA+  ++ L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR+ Q+    P L V++  RGNV TRL KL+     A +LA AGLKRL + E + + +  +  LPA   G    + C    ++    LE LNH +
Sbjct:    7 IRIATRKSPLALWQAYYVKDALQKAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYHHVDELPQGAVVGTCSLRRQCQLKAYRPDL-VIKELRGNVGTRLSKLDAGEYDAIILAAAGLKRLELEERIRSFIEPEQSLPAVGQGAV-GIECRTNDERILKLLEPLNHAD 224          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_PSEAB (Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hemC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.875e-39
Identity = 100/224 (44.64%), Postives = 128/224 (57.14%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGE 997
            IRI TR S LAL QA   + +L   HP L     + ++ + + GDK+L  PLA IGGKGLF KE++ AL+    DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR++Q+L R P L++    RGNV TRL KL+     A +LA AGL RL     + + +SVDD LPA   G    + C          LE L+H +
Sbjct:    6 IRIATRQSALALWQAEYVKARLEQAHPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVPMDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRRQAQLLARRPDLQI-RFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAV-GIECRTADSDLHALLEPLHHSD 223          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_GEOBB (Porphobilinogen deaminase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.875e-39
Identity = 94/195 (48.21%), Postives = 124/195 (63.59%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPA 910
            +RIGTR S LAL QA+  +++L   +P++     + +  IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR++Q+L   P L+ M   RGNVQTR+ KL    + A +LA AGL RL   + +T +L  D  LPA
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPDMT----VTLTKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI-SNGVKFADLPQGARIGTSALRRQAQLLKVRPDLE-MVIIRGNVQTRMDKLKTEGLDAVILAAAGLNRLGFADQITEMLPTDLSLPA 194          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_CHRVO (Porphobilinogen deaminase OS=Chromobacterium violaceum GN=hemC PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 5.875e-39
Identity = 91/199 (45.73%), Postives = 129/199 (64.82%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            I I +R S LA+ QA   + +L AL+P L     ++I+ + T GD+IL + L+ IGGKGLF KE+++AL++ + D+AVHS+KDVP  LP+   L    +RED RDAF+          PAGS+VGT+SLRR++Q+  R+P L V +  RGNVQTRL+KL++    A +LA AGLKRL + E +   L+  + LPA   G
Sbjct:    4 IVIASRESRLAMWQAEHIQARLQALYPHLT----VEILGMTTQGDQILDKTLSKIGGKGLFVKELEQALMDGRADLAVHSLKDVPMTLPDGFALAAVCEREDPRDAFVSNRYQHLSELPAGSVVGTSSLRREAQLRARFPQLAV-KPLRGNVQTRLKKLDDGEFDAIILAAAGLKRLGLAERIQGELAPSESLPAAGQG 197          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_SHEFN (Porphobilinogen deaminase OS=Shewanella frigidimarina (strain NCIMB 400) GN=hemC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.673e-39
Identity = 92/200 (46.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:  323 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            IIRI TR SPLA+ QA   + +L  +HP L     ++++ + T GD IL  PLA IGGKGLF KE++ A++ ++ DIAVHSMKD+P   PE   L    +RED RDAF+          P G++VGT+SLRR+ QI    P L V+++ RGNV TRL KL+     A +LA AGL RL + E + N +S ++ LPA   G
Sbjct:    5 IIRIATRKSPLAMWQAEFVKAELERIHPGLT----VELLPMSTKGDVILDTPLAKIGGKGLFVKELEVAMLENRADIAVHSMKDLPVEFPEGLGLQVICEREDPRDAFVSNNYKSISELPQGAVVGTSSLRRQCQIRAARPDL-VIKDLRGNVGTRLAKLDSGDYDAIILAAAGLIRLKLNERIANFISAEESLPANGQG 199          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_MANSM (Porphobilinogen deaminase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.673e-39
Identity = 93/199 (46.73%), Postives = 123/199 (61.81%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSG 922
            ++I TR SPLAL QA+  +++L AL+P+L     +++V + T GD IL  PLA IGGKGLF KE++ AL+N + DIAVHSMKDVP   P+   L    +RED RDAF+          P G+IVGT+SLRR+ Q+    P L +  + RGNV TRL KL+     A +LA AGL RL M E + + +  D  LPA   G
Sbjct:    7 LKIATRQSPLALWQANYVKDRLTALYPDLQ----VELVTMVTKGDVILDTPLAKIGGKGLFVKELEHALLNHEADIAVHSMKDVPMEFPQGLGLSVICKREDPRDAFVSNKYRSLAELPQGAIVGTSSLRRQCQLKSLRPDLDI-RSLRGNVGTRLSKLDNGDYDAIILASAGLIRLGMAERIASFIETDISLPAAGQG 200          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_GEOUR (Porphobilinogen deaminase OS=Geobacter uraniireducens (strain Rf4) GN=hemC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.673e-39
Identity = 98/222 (44.14%), Postives = 133/222 (59.91%), Query Frame = 2
Query:  326 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNH 991
            +RIGTR S LAL QA+  +++L   +P L     + ++ IKT GDKIL  PLA +GGKGLF KEI+EA++   IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR++Q+L   P ++ M   RGNV+TR+ KL    + A +LA AGLKRL  T+ V   L  D  +PA    G   + C    ++  + ++  NH
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPGLE----VSLLKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGLHCITEREDPRDAVI-SRGIKFADLPKGAKIGTSALRRQAQLLKIRPDME-MVIIRGNVETRINKLEAENLDAVILAAAGLKRLGFTDKVAEYLPTDLSIPA-IGQGALGIECRLDNEEVKSAIDFFNH 220          
BLAST of DY262715 vs. ExPASy Swiss-Prot
Match: HEM3_SHESH (Porphobilinogen deaminase OS=Shewanella sediminis (strain HAW-EB3) GN=hemC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.002e-38
Identity = 97/231 (41.99%), Postives = 134/231 (58.01%), Query Frame = 2
Query:  323 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRKSQILHRYPSLKVMENFRGNVQTRLRKLNERVVQATLLALAGLKRLSMTENVTNILSVDDMLPARCSGGYWELLCEAMTKKWANYLESLNHGEKKNLLL 1015
            +IRI TR SPLAL QA   + +L   H  L     ++++ + T GD IL  PLA +GGKGLF KE++ A++  + DIAVHSMKDVP   PE   L    +RED RDAF+          P G++VGT+SLRR+ QI    P L V+ + RGNV TRL KL+     A +LA AGLKRL + E +T+ +S ++ LPA   G    + C    ++    L  L H E ++ ++
Sbjct:    5 VIRIATRKSPLALWQAEFVKAELEKFHEGLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLEDRADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNNYKNISELPQGAVVGTSSLRRQCQIRASRPDL-VIRDLRGNVGTRLGKLDAGNYDAIILAAAGLKRLKLEERITSFISAEESLPANGQGAV-GIECRINDERVKALLAPLEHTETRHRVI 229          
The following BLAST results are available for this feature:
BLAST of DY262715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
HEM3_ERWT94.498e-3942.67Porphobilinogen deaminase OS=Erwinia tasmaniensis ... [more]
HEM3_VIBVY5.875e-3942.86Porphobilinogen deaminase OS=Vibrio vulnificus (st... [more]
HEM3_VIBVU5.875e-3942.86Porphobilinogen deaminase OS=Vibrio vulnificus GN=... [more]
HEM3_PSEAB5.875e-3944.64Porphobilinogen deaminase OS=Pseudomonas aeruginos... [more]
HEM3_GEOBB5.875e-3948.21Porphobilinogen deaminase OS=Geobacter bemidjiensi... [more]
HEM3_CHRVO5.875e-3945.73Porphobilinogen deaminase OS=Chromobacterium viola... [more]
HEM3_SHEFN7.673e-3946.00Porphobilinogen deaminase OS=Shewanella frigidimar... [more]
HEM3_MANSM7.673e-3946.73Porphobilinogen deaminase OS=Mannheimia succinicip... [more]
HEM3_GEOUR7.673e-3944.14Porphobilinogen deaminase OS=Geobacter uraniireduc... [more]
HEM3_SHESH1.002e-3841.99Porphobilinogen deaminase OS=Shewanella sediminis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DA01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262715 ID=DY262715; Name=DY262715; organism=Citrus clementina; type=EST; length=1220bp
AAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCTTCTTTC
ATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATACTGGGC
AGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGCAGCTTC
TTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCTATCCAG
GGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACTCCGTCT
TTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGCCTCTGC
TGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAGGAAGCC
CTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATGGCTTTG
CATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAATAAAGAC
AACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTGGGAAGG
GCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAAATTGAC
ATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGAGAAGAC
CATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCATTTATTT
CGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCATTGTTGGT
ACTGCTTCACTTAGAAGAAAGTCTCAAATACTCCATAGATATCCATCATT
GAAAGTGATGGAAAATTTCAGAGGTAACGTCCAGACAAGGTTGAGAAAAC
TTAATGAGAGGGTGGTCCAAGCGACATTGTTAGCACTAGCTGGACTTAAA
CGCTTAAGCATGACAGAAAATGTGACTAACATTCTTTCAGTTGATGACAT
GCTTCCAGCCCGTTGCTCAGGGGGCTATTGGGAATTGCTTTGCGAAGCCA
TGACAAAAAAATGGGCTAATTATTTAGAATCATTGAATCATGGAGAAAAA
AAAAATTTGCTGTTGCTTGTGAAAAAACCTTTCCTTGGAACCTTTGGAAG
GGATTTTGCCCCAAATTCCTATTTGCCGGGAAACCCTTTGGGAAAAAAAA
AAAAAGGGGGAACGGGGTTTATTTTTAAAGAAAATGGGGGGGCTTTCCCC
CAAAGGGGGAAACCTCTTTGTTTTTTTTAAAAAAACTCCAAAAAAAAGGG
TCCCCCATAAATCCCTTTTT
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