DY262717

Overview
NameDY262717
Unique NameDY262717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1167
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.047e-21
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPA-SWSGRLWARTHCT-QDSKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            F I N C  TIWP  +   G       GF+L SGQ++SI+VPA + +GR+WART C+      +C TGDCG G L CS +G  PPATLAE+T+ G    DF+D+S++DG+NL M  +  T  G A  C    C
Sbjct:   23 FNIKNNCGFTIWPAGIPVGG-------GFALGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCG-GQLSCSLSGR-PPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFSCST--GDALQCRDPSC 144          
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.504e-20
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            F ITN C  T+WP  +   G       GF L S QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ +G   PATLAE+T+ G+   DF+D+S++DGYNL M  +  T  G A  C  +GC
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCST--GVALKCRDSGC 142          
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.672e-19
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            F ITN C  T+WP  +   G       GF L S QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ +G   PATLAE+T+ G+   DF+D+S++DGYNL M  +  T  G A  C  A C
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCST--GVALKCRDANC 142          
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.724e-19
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPA-SWSGRLWARTHCTQD--SKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            FTITN CS T+WP      G  QLSP       GQ+ +I+VPA + SGR+W RT C+ D   + +C TGDC +G L C+ +G   P TLAEFT+ G+   DF+D+S++DGYN+ M  +    SG    C  + C
Sbjct:   29 FTITNRCSFTVWPAATPVGGGVQLSP-------GQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDC-AGALSCTLSG-QKPLTLAEFTIGGS--QDFYDLSVIDGYNVAMSFS--CSSGVTVTCRDSRC 149          
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.864e-19
Identity = 58/133 (43.61%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPASWS-GRLWARTHCT-QDSKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            F ITN C  T+WP  +   G       GF L S QS++I+VPA  S GR+W RT C+  + + +C TGDC +G L C+ +G   PATLAE+T+ G+   DF+D+S++DG+NL M  +  T  G A  C  A C
Sbjct:   24 FRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDC-AGALSCTLSGQ--PATLAEYTIGGSQ--DFYDISVIDGFNLAMDFSCST--GVALKCRDANC 142          
BLAST of DY262717 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.325e-16
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  160 FTITNECSNTIWPGILSGAGTPQLSPTGFSLESGQSTSISVPASW-SGRLWARTHCT-QDSKFTCLTGDCGSGTLECSGTGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVTPRTQSGTAGNCTAAGC 552
            FTITN C  T+WP  +   G       G  L+ GQ+ +++VPA   SGR+W RT C+      +C TGDC +G L C+ +G   PATLAEF++ G    D++D+S++D YNL M  +  T  G A  C  + C
Sbjct:   24 FTITNNCGYTVWPAAIPVGG-------GQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNGGSGSCQTGDC-AGALSCTLSG--QPATLAEFSIGGEH--DYYDISVIDVYNLAMDFSCST--GDALQCRDSSC 142          
The following BLAST results are available for this feature:
BLAST of DY262717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLP_WHEAT3.047e-2145.86Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST3_AVESA7.504e-2044.36Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.672e-1944.36Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
TLP_ORYSJ3.724e-1944.03Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST1_AVESA4.864e-1943.61Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST4_AVESA1.325e-1640.60Thaumatin-like pathogenesis-related protein 4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DA03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262717 ID=DY262717; Name=DY262717; organism=Citrus clementina; type=EST; length=1167bp
CTACCATCTTATTAATCAAGAGTCAAAACCAAACAAACATTTCATTTACA
CATTTCTTTCTCTCTTATTACAAATTCAATGGCGGCCCCTATTCAAATTT
CTATCGCCATAACCACCCTCTGTCTTCTCCAATTGCTTTCCGAAACATTG
TCAGCGACATTCACAATCACAAACGAGTGCAGCAATACAATATGGCCAGG
CATACTCTCAGGCGCAGGAACCCCACAACTCTCGCCCACTGGCTTCTCCT
TGGAGTCAGGCCAGTCCACTTCGATCTCTGTTCCAGCTTCTTGGTCAGGC
CGCCTTTGGGCCCGCACTCACTGTACCCAAGATTCCAAATTCACTTGCCT
GACCGGCGACTGTGGCTCCGGCACTCTCGAATGCTCCGGCACTGGCGCCG
CCCCTCCAGCCACCCTTGCTGAATTCACGTTGAACGGCGCAGGCGGCCTT
GATTTCTTCGACGTCAGCCTCGTGGACGGATATAATCTCCCCATGCTGGT
CACACCTCGAACTCAAAGCGGGACCGCTGGCAATTGTACGGCAGCTGGGT
GTATTGCTGAATTGAACAATGCGTGTCCCTCGGAGCTTAAGGTTACAGAG
GCCGGCAATGGTGAGGATGTTGCTTGCAAGAGCGCATGTGAAGCCTTTGG
TGACCCCCAGTACTGCTGCAGTGGAGCTTTCGCGACGCCGGATACTTGTA
TACCCACTTCTTATTCAATGTTCTTCAAGAATGCGTGCCCTAAAGCTTAC
AGCTACGCTTATGATGATGGCACCAGCACCTTCACCTGTGCCGCTGCCGA
TTATGTCATCACTTTCTGTCCTAGCCCCAGTACCAGTCTGAAATCGGCAA
ATGGGACACTGTCGGTGGCGGCCATATATCGGTCAGCACTCGACGCAGGA
GTCCGACTTGCTTCGGTACTGCCGTCGTCATGCTGGTGGCAGTTTGGCCG
GTTGTGGCGGCTCCATTGAACCCGCCAAGCTACTAAGCTACTCAAAAACC
AAATACCATCCCCTTGCTCCTTTGTTTTGTGCCTGCCTCTGAAAAATTGG
GCTTTTGGATTTTGCTCCCCCCTCCAGGCCACCCAACCCAGGGGTTCCTC
AAATTTTTCTAAAAGGGGCTTGTTTTCCCAAAAATTGGAGAGGCCACACC
TCCAAAAGCCCCCAAAG
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