DY262794

Overview
NameDY262794
Unique NameDY262794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.294e-19
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  104 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 118          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.294e-19
Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  110 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRYF-SHIFFYIISLIDLNKIFHFSFHINFYVLV 487
            MGAAYGTAK+ VG+++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +                 MAIGIVGD+GVR F      Y+I ++    I  FS  +  Y L+
Sbjct:   45 MGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVIMML----ILIFSEALGLYGLI 166          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.208e-19
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   29 MSSAFIGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            MS +  G E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR
Sbjct:    1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.883e-19
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  104 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.883e-19
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  104 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.424e-19
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  113 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRYFS 403
            G+AYGTAK+G G+ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + +                  AIGI GDAGVR  S
Sbjct:   40 GSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALS 136          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.431e-18
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  104 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRYFSHIFFYIISLI 433
            SC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV+ F       +S++
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMV 133          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 5.438e-18
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  113 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRYF---SHIFFYIISLIDLNKI 448
            GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR F   S IF  ++ ++   ++
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEV 149          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.582e-17
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  104 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            +C GA+YGTAKSGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V++S  ++ K     L+ G+                  AIGIVGDAGVR
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVR 117          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.699e-17
Identity = 48/66 (72.73%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  197 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVR
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 66          
The following BLAST results are available for this feature:
BLAST of DY262794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_TORMA1.294e-1952.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DICDI1.294e-1944.88V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL_HUMAN2.208e-1944.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT2.883e-1952.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE2.883e-1952.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_CAEEL6.424e-1948.45V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL2_SCHPO1.431e-1840.91V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_NEUCR5.438e-1839.32V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_CANTR1.582e-1745.36V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE2.699e-1772.73V-type proton ATPase 16 kDa proteolipid subunit (F... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DH06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262794 ID=DY262794; Name=DY262794; organism=Citrus clementina; type=EST; length=1178bp
CGATCGGTTCTTTTTAGGAGGAATTGAAATGTCATCCGCGTTCATTGGCG
ATGAAACGGCGCCTTTTTTCGGCTTCCTCGGCGCCGCTGCCGCCCTTGTT
TTCTCCTGCATGGGAGCAGCGTATGGGACGGCGAAGAGTGGAGTGGGCGT
AGCATCGATGGGAGTGATGAGGCCAGAGCTTGTAATGAAATCGATTGTGC
CAGTTGTGATGGCGGGAGTGTTAGGTATTTATGGTTTAATTATTGCTGTT
ATTATTAGTACTGGCATTAACCCAAAGGCCAAATCATATTATCTATTCGA
TGGCTACGCTCATTTGTCTTCGGGTCTCGCTTGCGGCCTCGCTGGTCTCT
CTGCTGGTATGGCTATTGGCATCGTTGGTGATGCTGGTGTCAGGTATTTT
TCTCACATTTTTTTTTATATCATTTCACTTATTGATTTAAATAAAATTTT
TCATTTTTCATTTCATATTAATTTTTATGTTCTAGTCTTCAAGTTCTTTT
ACGAAGATGACAGAGTGTATTTGTATGACTGAATTTGATGCTGCCAATTG
CCAAATGTGACCGTAGTAACACCCTTAAAGACCATGCACAAAGCATAATA
TCCTGTGAAGAGTTGATGTCTTTGATAAAGAGAACTATAAAATGAATTTA
ATTTTACAATATGTGTAAATGAGGCCTGCTTAATTCTTATCTTTTTTCTG
TTAGTTTTGAAATCTATTGATTCATGTTTGATAGATGGTGTGGCTTTTGG
TTCATTAACTTGTTAAATATGTTGAGTAATCACAGTTTTGGTTAATTTTT
TGCTTCTGTATTTACTATTAGCATTTTGTTCTAATCTGATAACAGTGCCG
CATTATTGAAGCAAGATAATAGTAGCTTCATTGTACAGAGTGAAACATCA
CGACATTTTGCATGAACATGCATATGGCTGTGCTTTTCCTTTAGCTGTGT
CTTTGATTATCAGATTTCCTGAGGTCTTTCATCTTGGGTTCTGGTGAGGA
CCCTGAAGCCATAAATTGCTCCTCATCCAAAAAAATGAATCTGCTTTAGT
TTGGATGAATTGACCCAATTGCATAATTTGGCTTTGTTTACCGGAATTCT
ACTGGAGGTGGTTTGAATTTTTTCCCCAAAACTGGCTTGGGCGTCTCAAG
GGGGGGTTTAAAATCCTGGTTTGCCTTT
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