DY262794

Overview
NameDY262794
Unique NameDY262794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.525e-17
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  113 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            GAAYGTAK+GVG+++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    +   L+ G+                  AIGIVGDAGVR
Sbjct:   28 GAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVR 118          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.090e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  110 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  K     L+ G+                  AIGIVGDAGVR
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVR 117          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.627e-15
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  113 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVR 125          
BLAST of DY262794 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.599e-15
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  113 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 394
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVR 127          
The following BLAST results are available for this feature:
BLAST of DY262794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_SCHPO3.525e-1746.81V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_YEAST5.090e-1645.26V-type proton ATPase subunit c OS=Saccharomyces ce... [more]
VATL_ENTDI5.627e-1544.68V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTHI9.599e-1543.62V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100DH06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262794 ID=DY262794; Name=DY262794; organism=Citrus clementina; type=EST; length=1178bp
CGATCGGTTCTTTTTAGGAGGAATTGAAATGTCATCCGCGTTCATTGGCG
ATGAAACGGCGCCTTTTTTCGGCTTCCTCGGCGCCGCTGCCGCCCTTGTT
TTCTCCTGCATGGGAGCAGCGTATGGGACGGCGAAGAGTGGAGTGGGCGT
AGCATCGATGGGAGTGATGAGGCCAGAGCTTGTAATGAAATCGATTGTGC
CAGTTGTGATGGCGGGAGTGTTAGGTATTTATGGTTTAATTATTGCTGTT
ATTATTAGTACTGGCATTAACCCAAAGGCCAAATCATATTATCTATTCGA
TGGCTACGCTCATTTGTCTTCGGGTCTCGCTTGCGGCCTCGCTGGTCTCT
CTGCTGGTATGGCTATTGGCATCGTTGGTGATGCTGGTGTCAGGTATTTT
TCTCACATTTTTTTTTATATCATTTCACTTATTGATTTAAATAAAATTTT
TCATTTTTCATTTCATATTAATTTTTATGTTCTAGTCTTCAAGTTCTTTT
ACGAAGATGACAGAGTGTATTTGTATGACTGAATTTGATGCTGCCAATTG
CCAAATGTGACCGTAGTAACACCCTTAAAGACCATGCACAAAGCATAATA
TCCTGTGAAGAGTTGATGTCTTTGATAAAGAGAACTATAAAATGAATTTA
ATTTTACAATATGTGTAAATGAGGCCTGCTTAATTCTTATCTTTTTTCTG
TTAGTTTTGAAATCTATTGATTCATGTTTGATAGATGGTGTGGCTTTTGG
TTCATTAACTTGTTAAATATGTTGAGTAATCACAGTTTTGGTTAATTTTT
TGCTTCTGTATTTACTATTAGCATTTTGTTCTAATCTGATAACAGTGCCG
CATTATTGAAGCAAGATAATAGTAGCTTCATTGTACAGAGTGAAACATCA
CGACATTTTGCATGAACATGCATATGGCTGTGCTTTTCCTTTAGCTGTGT
CTTTGATTATCAGATTTCCTGAGGTCTTTCATCTTGGGTTCTGGTGAGGA
CCCTGAAGCCATAAATTGCTCCTCATCCAAAAAAATGAATCTGCTTTAGT
TTGGATGAATTGACCCAATTGCATAATTTGGCTTTGTTTACCGGAATTCT
ACTGGAGGTGGTTTGAATTTTTTCCCCAAAACTGGCTTGGGCGTCTCAAG
GGGGGGTTTAAAATCCTGGTTTGCCTTT
back to top