DY262796

Overview
NameDY262796
Unique NameDY262796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1170
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD_CYPCA (Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 8.259e-35
Identity = 88/278 (31.65%), Postives = 139/278 (50.00%), Query Frame = 2
Query:  230 PDYVKQPSSMASTSEPNRNPKYDPKKPHITDTPITKANWYKHVNWLNVTFIIGIPLAGCVAAFWTP-LKWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNPKRI---GRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND--WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD-NXXXXXXXXXXLCYLGKGSHTSPHNSP 1042
            P +  +P ++    +     K  PK P +             + W NV  +  + L      F  P  +  T +W      ++ LGITAG HRLW+H+SY ASLPL +FLAL    A +  I  WSRDHR HH+Y++T+ DP++  +G  +SH+GW++++++P  I    + +++DL  D VV++Q + Y   V+ M    P+ V   +W +  W   F+ A +LR   +  AT+ VNS AH     P+D +             +G+G H   H  P
Sbjct:    9 PIWHPEPGTVEDVFDHTYKEKEGPKPPTV-------------IVWRNVILMSLLHLGALYGLFLFPSARALTWIWFFGCLLFSALGITAGAHRLWSHRSYKASLPLQIFLALGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNAVRGFFFSHVGWLLVRKHPDVIEKGRKLELSDLKADKVVMFQRRFYKPSVLLMCFFVPTFVPWYVWGESLWVAYFVPA-LLRYALVLNATWLVNSAAHMWGNRPYDSSINPRENRFVTFSAIGEGFHNYHHTFP 272          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.409e-34
Identity = 76/233 (32.62%), Postives = 126/233 (54.08%), Query Frame = 2
Query:  362 WLNVTFIIGIPLAGCVAAFWTPL-KWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNP---KRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND-WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD-NXXXXXXXXXXLCYLGKGSHTSPHNSP 1042
            W N+  +  + L         P  K  T LWA  YY  + +G+TAG HRLW+H++Y A LPL VFL +    A +  +  W+RDHRAHH++++T+ DP++ R+G  +SH+GW++++++P   ++ G  +++DL  + +V++Q ++Y   ++ M  I P+ V    W + +      A  LR   +  AT+ VNS AH     P+D            L  +G+G H   H  P
Sbjct:   62 WRNIILMSLLHLGALYGIILIPTCKIYTLLWAFAYYLLSAVGVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGLLNMSDLKAEKLVMFQRRYYKPGILLMCFILPTIVPWYCWGEAFPQSLFVATFLRYAIVLNATWLVNSAAHLYGYRPYDKTISPRENILVSLGAVGEGFHNYHHTFP 294          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD_MESAU (Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.409e-34
Identity = 78/233 (33.48%), Postives = 125/233 (53.65%), Query Frame = 2
Query:  362 WLNVTFIIGIPLAGCVAAFWTPL-KWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNP---KRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND-WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD-NXXXXXXXXXXLCYLGKGSHTSPHNSP 1042
            W N+  +  + L         P  K  T LWA VYY  +  GI AG HRLW+H++Y A LPL +FL +    A +  +  W+RDHRAHH++++T  DP+  R+G  +SH+GW++++++P   ++ G+ D++DL  + +V++Q ++Y   ++ M  I P+ V    W + +      +  LR   +  AT+ VNS AH     P+D N          L  LG+G H   H  P
Sbjct:   68 WRNIILMALLHLGALYGLVLVPSSKVYTLLWAFVYYVISIEGIGAGVHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETYADPHDSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPAILLMCFILPTFVPWYFWGEAFVNSLCVSTFLRYTLVLNATWLVNSAAHLYGYRPYDKNIDPRENALVSLGCLGEGFHNYHHAFP 300          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.409e-34
Identity = 85/287 (29.62%), Postives = 146/287 (50.87%), Query Frame = 2
Query:  203 PTAGMMAVDPDYVKQPSSMASTSEPN-RNPKYDPKKPHITDTPITKANWYKHVNWLNVTFIIGIPLAGCVAAFWTP-LKWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNP---KRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND-WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD-NXXXXXXXXXXLCYLGKGSHTSPHNSP 1042
            P+ G       + K P    +   P  ++  YDP      + P  K  +     W N+  +  + +         P  K  T L+A +YY  + LGITAG HRLW+H++Y A LPL +FL +    A +  +  W+RDHRAHH++++T+ DP++ R+G  +SH+GW++++++P   ++ G+ D++DL  + +V++Q ++Y   ++ M  I P+ V    W + +      +  LR   +  AT+ VNS AH     P+D N          +  +G+G H   H  P
Sbjct:   23 PSGGQQNGGEKFEKNPHHWGADVRPEIKDDLYDPSYQD-EEGPPPKLEYV----WRNIVLMALLHIGALYGITLVPSCKVYTCLFAYLYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGLLLMCFILPTLVPWYCWGETFVNSLCVSTFLRYAVVLNATWLVNSAAHLYGYRPYDKNISSRENILVSMGAVGEGFHNYHHAFP 304          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 9.131e-34
Identity = 78/233 (33.48%), Postives = 126/233 (54.08%), Query Frame = 2
Query:  362 WLNVTFIIGIPLAGCVAAFWTPL-KWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNP--KRIGRT-DITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND-WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD-NXXXXXXXXXXLCYLGKGSHTSPHNSP 1042
            W N+  +  + L         P  K  T +W + YY    LGITAG HRLW+H++Y A LPL VFL +    A +  +  WSRDHRAHH++++T+ DP++ R+G  +SH+GW++++++P  K  G T +++DL  + +V++Q ++Y   V+ +  I P+ V   LW++ ++    +A + R       T+ VNS AH     P+D            L   G+G H   H  P
Sbjct:   73 WRNIILMSLLHLGALYGITLIPTCKIYTYIWVLFYYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLNLSDLRAEKLVMFQRRYYKPGVLLLCFILPTLVPWYLWDETFQNSLFFATLFRYALGLNVTWLVNSAAHMYGYRPYDKTINPRENILVSLGAAGEGFHNYHHTFP 305          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.470e-33
Identity = 69/205 (33.66%), Postives = 120/205 (58.54%), Query Frame = 2
Query:  362 WLNVTFIIGIPLAGCVAAFWTP-LKWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNP---KRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWND-WKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD 961
            W N+  +  + L         P  K  T L+A +YY  + LGITAG HRLW+H++Y A LPL +FL +    A +  +  W+RDHRAHH++++T+ DP++ R+G  +SH+GW++++++P   ++ G+ D++DL  + +V++Q ++Y   ++ M  + P+ V    W + +      +  LR   +  AT+ VNS AH     P+D
Sbjct:   72 WRNIILMALLHLGALYGITLVPSCKLYTCLFAYLYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPDLLLMCFVLPTLVPWYCWGETFVNSLCVSTFLRYAVVLNATWLVNSAAHLYGYRPYD 276          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.470e-33
Identity = 72/217 (33.18%), Postives = 122/217 (56.22%), Query Frame = 2
Query:  326 PITKANWYKHV--NWLNVTFIIGIPLAGCVAAFWTPLKWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQNPK--RIGRT-DITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWNDWKGGFLYAGILRIFFLHQATFCVNSLAHWLEKHPFD 961
            P T    YK++  N+L  ++     L G    F T  KW+T L++ V +  + +GITAG HRLW HK++ A LPL + L +    A + +   W+R+HR HH+Y+DT+ DP++  +G  YSH+GW+++K++P   + G+T D++D+  +PV+ +Q K+ + ++  +    P+ +    W +      +  + R  F    TF VNS AH     P+D
Sbjct:   27 PKTTPRKYKYIYTNFLTFSYAHLAALYGLYLCF-TSAKWETLLFSFVLFHMSNIGITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWLLVKKHPDVLKYGKTIDMSDVYNNPVLKFQKKYAVPLIGTVCFALPTLIPVYCWGESWNNAWHIALFRYIFNLNVTFLVNSAAHIWGNKPYD 242          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.498e-15
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  434 WQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMV-MKQNPKRIG-RTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAV---AGLLWNDWKGGFLYAGILRIFFLHQATFCVNSLAH 937
            W     A++ Y   GLGIT  YHR  AH+S+     L  F A  G  A++G    W   HR HH++TD+++DP+S  +G  +SHL W+       ++ G RT++ DL       W +K   + V++  L F   +    GL +  W  G      + +   H  T  +NSL H
Sbjct:   61 WPALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHRYHHQFTDSDRDPHSPNEGFWFSHLLWLFDTGYLVEKCGRRTNVEDLKRQ----WYYKFLQRTVLYHILTFGFLLYYFGGLSFLTWGMG------IGVAMEHHVTCLINSLCH 223          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.036e-14
Identity = 68/240 (28.33%), Postives = 109/240 (45.42%), Query Frame = 2
Query:  257 MASTSEPNRNPKYDPKKPHITDTPITKANW------YKHVNWLNVTFIIGIPLAGCVAAFWTPLKWQTALWAVVYYFWT--GLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQN--PKRIGRTDITDLNEDPVVVWQHKHYIKVVIF--MGL-IFPSAVAGLLWNDWKGGFLYAGILRIFFLHQATFCVNSLAH 937
            M+ TS    N + +P  P   +    K  W      ++ ++++  +    +     +A F+    W +ALW V + F+T  GLGIT  YHR  AH+S+     L   LA     A++G    W   HR HH++TD+ +DP+S ++G  +SHL W+        K   R ++ DL       W ++   K V+F  +GL  F   + G+ +  W  G      L +      T  +NSL H
Sbjct:    1 MSVTSTVEENHQKNPSTPAAVEEK-KKRRWVFWDRRWRRLDYVKFSASFTVHSLALLAPFY--FTW-SALW-VTFLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQFTDSERDPHSPKEGFWFSHLLWIYDSAYLVSKCGRRANVEDLKRQ----WFYRFLQKTVLFHILGLGFFLFYLGGMSFVTW--GMGVGAALEV----HVTCLINSLCH 225          
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.371e-13
Identity = 57/201 (28.36%), Postives = 96/201 (47.76%), Query Frame = 2
Query:  347 YKHVNWLNVTFIIGIPLAGCVAAFWTPLKWQTALWAVVYYFWTGL-GITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQN-PKRIGR-TDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWNDWKGGFLYAGI-LRIFFLHQATFCVNSLAH 937
            +K +++  V  ++ + L   +A F     W+    A   Y  TGL GIT  +HR  +HK++     L    A  G  A++G+   W   HR HH++ D+++DP+S   G  +SH+ WM       +R G   ++ DL + P   +    YI        + P A+A  L+      F+  G+ +RI +++  T+ VNS  H
Sbjct:   98 WKAMDFGAVAVVLSMHLLSLLAPF--QFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWMFDTNTITQRCGEPNNVGDLEKQPFYRFLRTTYI--------LHPLALAVALYAMGGFPFIVWGMGVRIVWVYHITWLVNSACH 288          
The following BLAST results are available for this feature:
BLAST of DY262796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ACOD_CYPCA8.259e-3531.65Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2[more]
ACOD_PIG1.409e-3432.62Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_MESAU1.409e-3433.48Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD... [more]
ACOD2_RAT1.409e-3429.62Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]
ACOD_BOVIN9.131e-3433.48Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD2_MOUSE3.470e-3333.66Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
ACO11_TRINI3.470e-3333.18Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
ADS1_ARATH2.498e-1531.79Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis tha... [more]
ADS2_ARATH8.036e-1428.33Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis tha... [more]
ADS3_ARATH1.371e-1328.36Palmitoyl-monogalactosyldiacylglycerol delta-7 des... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DH08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262796 ID=DY262796; Name=DY262796; organism=Citrus clementina; type=EST; length=1170bp
CCCCCTTCAACCTCGTCATTCACTTGAACGTGGTGAAGCTTTCCATCGTT
GCCGTTGGAGCTTTGAACTCACACCCACCGGAGGCCAACCGGAGCTCAAT
CTTTTTTTGAGCCGCTAGTTGCTTCCAGTCGAATTTCTTCGACATCCCTC
GCTTTCCCTACTACTACCTTTCCACCACACCCTCAGTATGCCTTCCCACC
AGCCTACCGCCGGCATGATGGCCGTCGACCCCGACTACGTCAAGCAGCCG
TCTTCCATGGCGAGCACCTCGGAGCCGAACCGCAACCCAAAGTACGACCC
TAAGAAGCCACACATCACCGACACGCCCATCACCAAGGCCAACTGGTACA
AGCACGTCAACTGGCTGAACGTTACCTTCATCATCGGCATCCCTCTCGCT
GGCTGCGTTGCCGCCTTCTGGACTCCTCTCAAATGGCAGACCGCCCTCTG
GGCCGTCGTATACTACTTCTGGACTGGTCTCGGCATCACAGCTGGCTACC
ATCGCCTCTGGGCACACAAGTCCTACAACGCCTCTCTCCCACTCAGCGTC
TTCCTTGCCCTTGTTGGCGGCGGTGCCGTTGAGGGTTCCATCCGCTGGTG
GAGCCGCGACCACCGTGCCCACCACCGCTACACCGACACCAACAAGGACC
CATACAGCGTCCGCAAGGGACTTCTCTACAGCCATCTTGGCTGGATGGTC
ATGAAGCAGAACCCTAAGCGTATTGGCCGCACCGACATCACCGACTTGAA
CGAGGACCCCGTCGTTGTCTGGCAGCACAAGCACTACATCAAGGTTGTCA
TCTTCATGGGTTTGATCTTCCCCTCGGCTGTCGCTGGTCTTCTCTGGAAC
GACTGGAAGGGTGGCTTTCTCTACGCCGGTATCCTCCGCATCTTCTTTCT
CCACCAGGCTACCTTCTGCGTCAACTCGCTTGCCCATTGGCTCGAAAAAC
ACCCCTTTGACAACCCCACACCCCCCGGGACCCCTCATCCCCCCCTTTGT
TATCTCGGCAAAGGTTCCCACACTTCCCCCCACAATTCCCCTCTAAAAAC
CAAACCCTTTCAAGTGGCACCCGTTACAACCCACCCAGGTGGCCCTCCCG
GGTTGGAACAAACCTTGCTCTCCCTTCCACCCCAACCATTTCCGTGCCAC
CAAAAATAAAAAAGGGGTCC
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