DY262796

Overview
NameDY262796
Unique NameDY262796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1170
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ADSL4_ARATH (Delta-9 desaturase-like 4 protein OS=Arabidopsis thaliana GN=At1g06350 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.988e-13
Identity = 52/179 (29.05%), Postives = 85/179 (47.49%), Query Frame = 2 
Query:  431 KWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQ--NPKRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAVAGLLWNDWKGGFLYAGI--------LRIFFLHQATFCVNSLAH 937
            KW+   + +V +  T L IT  +HR  +H+S+     L    A     A++G    W   HR HH++TD+++DP+S ++GLL+SH+ W+   Q    K  GR ++ DL +     W +K   + +    L+F           W   +LY G+        + IF  +  T+ VNS  H
Sbjct:   55 KWEALRFGLVLFALTTLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEGLLFSHILWIFDTQYIKYKCGGRDNVLDLKKQ----WFYKFLRRTIAVHILMF-----------WTILYLYGGLPYLTCGGGVGIFIGYHVTWLVNSACH 218
[Close]
BLAST of DY262796 vs. ExPASy Swiss-Prot
Match: ADSL5_ARATH (Delta-9 desaturase-like 5 protein OS=Arabidopsis thaliana GN=At1g06360 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.858e-11
Identity = 52/174 (29.89%), Postives = 82/174 (47.13%), Query Frame = 2 
Query:  431 KWQTALWAVVYYFWTGLGITAGYHRLWAHKSYNASLPLSVFLALVGGGAVEGSIRWWSRDHRAHHRYTDTNKDPYSVRKGLLYSHLGWMVMKQ--NPKRIGRTDITDLNEDPVVVWQHKHYIKVVIFMGLIFPSAV---AGLLWNDWKGGFLYAGILRIFFLHQATFCVNSLAH 937
            KW+   +  V Y  T L IT  YHR  AH+S+     L   LA     A++G    W   HR HH++TD+++DP+S  +G  +SH+ W+   +    K  GR ++ DL +     W +      + F  L+F + +    GL +    GG    G++     +  T+ VNS  H
Sbjct:   54 KWEALRFGFVLYALTSLSITFSYHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVWWICDTRYIKYKCGGRNNVMDLKQQ----WFYWFLRMTIGFHVLMFWTVLYLYGGLPYLTCGGG--VGGVIG----YHVTWLVNSACH 217
The following BLAST results are available for this feature:
BLAST of DY262796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ADSL4_ARATH3.988e-1329.05Delta-9 desaturase-like 4 protein OS=Arabidopsis t... [more]
ADSL5_ARATH2.858e-1129.89Delta-9 desaturase-like 5 protein OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DH08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262796 ID=DY262796; Name=DY262796; organism=Citrus clementina; type=EST; length=1170bp
CCCCCTTCAACCTCGTCATTCACTTGAACGTGGTGAAGCTTTCCATCGTT
GCCGTTGGAGCTTTGAACTCACACCCACCGGAGGCCAACCGGAGCTCAAT
CTTTTTTTGAGCCGCTAGTTGCTTCCAGTCGAATTTCTTCGACATCCCTC
GCTTTCCCTACTACTACCTTTCCACCACACCCTCAGTATGCCTTCCCACC
AGCCTACCGCCGGCATGATGGCCGTCGACCCCGACTACGTCAAGCAGCCG
TCTTCCATGGCGAGCACCTCGGAGCCGAACCGCAACCCAAAGTACGACCC
TAAGAAGCCACACATCACCGACACGCCCATCACCAAGGCCAACTGGTACA
AGCACGTCAACTGGCTGAACGTTACCTTCATCATCGGCATCCCTCTCGCT
GGCTGCGTTGCCGCCTTCTGGACTCCTCTCAAATGGCAGACCGCCCTCTG
GGCCGTCGTATACTACTTCTGGACTGGTCTCGGCATCACAGCTGGCTACC
ATCGCCTCTGGGCACACAAGTCCTACAACGCCTCTCTCCCACTCAGCGTC
TTCCTTGCCCTTGTTGGCGGCGGTGCCGTTGAGGGTTCCATCCGCTGGTG
GAGCCGCGACCACCGTGCCCACCACCGCTACACCGACACCAACAAGGACC
CATACAGCGTCCGCAAGGGACTTCTCTACAGCCATCTTGGCTGGATGGTC
ATGAAGCAGAACCCTAAGCGTATTGGCCGCACCGACATCACCGACTTGAA
CGAGGACCCCGTCGTTGTCTGGCAGCACAAGCACTACATCAAGGTTGTCA
TCTTCATGGGTTTGATCTTCCCCTCGGCTGTCGCTGGTCTTCTCTGGAAC
GACTGGAAGGGTGGCTTTCTCTACGCCGGTATCCTCCGCATCTTCTTTCT
CCACCAGGCTACCTTCTGCGTCAACTCGCTTGCCCATTGGCTCGAAAAAC
ACCCCTTTGACAACCCCACACCCCCCGGGACCCCTCATCCCCCCCTTTGT
TATCTCGGCAAAGGTTCCCACACTTCCCCCCACAATTCCCCTCTAAAAAC
CAAACCCTTTCAAGTGGCACCCGTTACAACCCACCCAGGTGGCCCTCCCG
GGTTGGAACAAACCTTGCTCTCCCTTCCACCCCAACCATTTCCGTGCCAC
CAAAAATAAAAAAGGGGTCC
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