DY262808

Overview
NameDY262808
Unique NameDY262808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1331
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.693e-24
Identity = 75/209 (35.89%), Postives = 110/209 (52.63%), Query Frame = 3
Query:  219 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSF
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSF 218          

HSP 2 Score: 22.3274 bits (46), Expect = 4.693e-24
Identity = 8/23 (34.78%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  884 NNGSSWVGTFIGTFVAAFYHQYI 952
            N+   WVG  IG  +A   ++Y+
Sbjct:  229 NHWIYWVGPIIGAVLAGALYEYV 251          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.106e-24
Identity = 75/209 (35.89%), Postives = 111/209 (53.11%), Query Frame = 3
Query:  219 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            ++ F+ +   +F++AV AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSF
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSF 218          

HSP 2 Score: 21.9422 bits (45), Expect = 6.106e-24
Identity = 8/23 (34.78%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  884 NNGSSWVGTFIGTFVAAFYHQYI 952
            N+   WVG  IG  +A   ++Y+
Sbjct:  229 NHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 7.947e-24
Identity = 75/209 (35.89%), Postives = 111/209 (53.11%), Query Frame = 3
Query:  219 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y++AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSF
Sbjct:   23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSF 218          

HSP 2 Score: 21.1718 bits (43), Expect = 7.947e-24
Identity = 7/23 (30.43%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  884 NNGSSWVGTFIGTFVAAFYHQYI 952
            N+   WVG  +G  +A   ++Y+
Sbjct:  229 NHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.279e-23
Identity = 75/209 (35.89%), Postives = 109/209 (52.15%), Query Frame = 3
Query:  219 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NPARSF
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSF 218          

HSP 2 Score: 21.9422 bits (45), Expect = 2.279e-23
Identity = 8/23 (34.78%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  884 NNGSSWVGTFIGTFVAAFYHQYI 952
            N+   WVG  IG  +A   ++Y+
Sbjct:  229 NHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.439e-22
Identity = 73/209 (34.93%), Postives = 109/209 (52.15%), Query Frame = 3
Query:  219 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IG +V + HL  I  TG  +NPARSF
Sbjct:   23 MVAFKGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGISVAIGHLFAINYTGASMNPARSF 218          

HSP 2 Score: 21.9422 bits (45), Expect = 1.439e-22
Identity = 8/23 (34.78%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  884 NNGSSWVGTFIGTFVAAFYHQYI 952
            N+   WVG  IG  +A   ++Y+
Sbjct:  229 NHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.881e-22
Identity = 75/206 (36.41%), Postives = 104/206 (50.49%), Query Frame = 3
Query:  231 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSF 842
            +E+   +F +AV AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +G ++SL+RA+ Y+VAQ +GAI G G +        N  G    N L +    G  +  E+I TF L   +FS+TD +R++     PV +P L IG +V + HL  I  TG  +NPARSF
Sbjct:    3 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPG--NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSF 190          

HSP 2 Score: 22.3274 bits (46), Expect = 1.881e-22
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  899 WVGTFIGTFVAAFYHQYI 952
            WVG  +G  VAA  + Y+
Sbjct:  207 WVGPIVGAAVAAILYFYL 224          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.924e-22
Identity = 73/197 (37.06%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  258 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A +SGGH+NPAVT GL +G  ++++  L Y +AQCLG+   C  +K       N      + +A G +   G+  EII TF LVYTV+ +A DPK+ +    + V+AP+ IGF V    LA  P +G  +NPARSF
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDP-----AGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVT----NGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.513e-22
Identity = 78/210 (37.14%), Postives = 110/210 (52.38%), Query Frame = 3
Query:  228 FEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGA---NELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            F++    +  RA +AEFI+            I Y K  +D  L+T      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL +G ++++I  + Y +AQ LG+   C  +K          GG A   + +A G     G+  EII TF LVYTV+ +A DPK+ +    +  +APL IG  V    LA  P +G  +NPARSF
Sbjct:    9 FDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTP-----GLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVT-------GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSF 202          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.513e-22
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  372 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV-------KAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS 839
            G+G+LG+A+AFG  +  + +    ISG H+NPAV+FGL +G +      L Y++AQ +GAI   G +         F+ S      G A+    GY  G G  +E++ T + +  +  ATD +  A        AP+ IG A+ ++HL +IP+T T +NPARS
Sbjct:   34 GIGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARS 190          
BLAST of DY262808 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.282e-22
Identity = 74/203 (36.45%), Postives = 102/203 (50.25%), Query Frame = 3
Query:  234 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSF 842
            EL   SF+RA++AEF+             +G   +  P       G  G+LG A AFG     LV     +SGGHINPA+T    L  ++SL RAL Y++AQ LGA+ G G +     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ + HL  IP TG G+NPARSF
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAP-------GPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAV-RGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSF 189          
The following BLAST results are available for this feature:
BLAST of DY262808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
AQP4_RAT4.693e-2435.89Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_DIPME6.106e-2435.89Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_MOUSE7.947e-2435.89Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_HUMAN2.279e-2335.89Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN1.439e-2234.93Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_PIG1.881e-2236.41Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP_ANTMA1.924e-2237.06Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ARATH2.513e-2237.14Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQPZ_PSEPK2.513e-2235.58Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
MIP_CHICK3.282e-2236.45Lens fiber major intrinsic protein OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262808 ID=DY262808; Name=DY262808; organism=Citrus clementina; type=EST; length=1331bp
CACTTAATAAATAGGCCACTCTCTACATCCTTCCCCATTCACCCATCATT
AAACTCTGTAGCAAACACAACAGTCGTAGCTCTTGTTTCTCCCTCTCGTT
TAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAG
TTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCAC
GACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTC
TTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTT
ATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAAC
TTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGC
CTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTG
GTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAAG
GTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTGC
AATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAACA
GGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCACC
GGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTTT
CTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCCGGTCT
TGGCACCACTCCCCATTGGGTTTGCTGTGTTCATGGTTCACTTGGCCACC
ATCCCCATCACCGGAACCGGCATCAACCCAGCTAGGAGTTTTTGGAGCTG
CTGTGATCTACAACAAGGAAAAAGCCTGGGATGAACAATGGATCTTCCTG
GGTTGGAACATTCATTGGAACTTTCGTTGCTGCATTCTACCACCAATACA
TTCCTCAGGCAACAGCCATTAAGGCTCTTGGATCCCTTCAGAACAATGCT
TAACCCTTAAAATTGATGTCGGGTGGCTTCCAGGTGAAAAATTTACGCCA
GAATCAGAAATGAAGTTTCTTTTTCAAAGCCCTTTAAAAAAAACCCTTTT
TAGCCCTTTTAAAGGGCCTTTTAAATTTAGGCGAAATTTAAAGGGCTTTT
GAAAATTGTAAAATTTTTAAAATTTTAGGCCTTTTTTTCGCCACCTCCTT
TTACCTATTGGTGGAAGGGGGGGAAATTTGTTGGTTACCCCATTTTTTAA
TTTTTTTTTTTTTCTGGGGGGTGTTTGTTTTTAATGAGAGGGGGGGGGGG
GGTGGGGGTGTGTTTTTTATATATAAAAAAA
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