DY262812

Overview
NameDY262812
Unique NameDY262812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1328
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262812 vs. ExPASy Swiss-Prot
Match: PRP19_YEAST (Pre-mRNA-splicing factor 19 OS=Saccharomyces cerevisiae GN=PRP19 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 5.224e-20
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3 
Query:  174 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLTMDDIVPIKTGKIVKPRPLTAA----------SIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQ 578
            M C+ISG+VP  PV+S  S  +FEK L+E+++ D G  P+T EPL++++IV I      +   LT +          SIP +L   QNEWD +ML NF L   L +  ++LS  +Y+ DAA  V A+L  E++E    L +S +Q
Sbjct:    1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS--AQQASLTESTNSATLKANYSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQ 143
The following BLAST results are available for this feature:
BLAST of DY262812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PRP19_YEAST5.224e-2039.31Pre-mRNA-splicing factor 19 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262812 ID=DY262812; Name=DY262812; organism=Citrus clementina; type=EST; length=1328bp
CTAAATATCAACACGCTCCCTTCTCCCTCGCTTTCTCTCTCTCCTCTTTT
CTCTTTACCCCTGCTGCTCCGTCCATTCTACTCGCAATCGCAAATCAAGT
AGAAAAACTAAAGCAGCGTCGTTTCGCTCCTCCGCAAGTCAACTGAAGCA
ACCAGTGCATTCTCACTGCCACAATGAATTGCTCAATCTCCGGCGAGGTG
CCGGAAGAGCCTGTCGTTTCGAAGAACTCAGGTTTACTCTTCGAGAAGCG
CTTAATCGAGAGACACATATTGGATTATGGAAAATGTCCGGTTACAGGGG
AACCACTTACTATGGATGACATTGTTCCAATCAAAACAGGCAAGATTGTG
AAGCCCAGACCATTGACAGCTGCTAGCATTCCTGGGATGCTTGGAATGTT
CCAGAATGAATGGGATGGTTTGATGCTATCCAATTTTGCTTTGGAGCAAC
AACTTCATACGGCAAGGCAAGAGCTAAGTCATGCATTGTACCAGCATGAT
GCTGCTTGTCGTGTGATTGCTAGACTTAAAAAGGAAAGGGATGAAGCAAG
GTCATTACTTGCGCAATCTGAAAGACAGATAATGCCTGCAGAATCAACTG
CAGTTACATCTAATGCTGCTCTTAGCAATGGGAAAAGAGCCCCTGAGGAT
GAGGATTTGGGCCCTGCTGGAAAGAAATTACATACTGGAATTACTCCTGC
TATTATTGCTGAGCTGACAGACTGTAATGCGGCTCTTTCACAGCAGCGGA
AAAAGCGGCAGGTTCCTCCAGCTTTGGCTCCCATTGATGCTTTGGAGAGG
TATACTCAGCTTGCTAGTCATCCTCTTCACAAAACTAGCAAACCTGGCAT
TGTTTCTCTCGATATCCATTACTCCAGGGATGTCATTGCAACCGGAGGAG
TTGATACCAATGCTGTACTTTTTGATCGACCATCAGGACAGATCGTCACT
ACCCTGAGTGGTCACTCAAAGAAAGGTACTAGCGTTAAATTTGTCACAGA
AGGTGATCTAATCTTAACAGGCTCGGCTGATAAAATGGTCGTGTGGGGCA
AGGATCTGAAAATGGAATTATGATTGAAAGCCACCTTTGAAGGATCAACT
GGTGGAGGGGGAAGCCTGTCCGGTTCCGGCCCCCAAAAAAAAACTTTGGG
AAGGGCTTCTTGGGGAAATAAAGGGGGGGTTTTTTAAAATTTTTTTTTGG
GGTTAATGGCCCGAAACAAGGGTTTTCAGAGAGGCGGGGAAACCAAGAGG
GGGAGACAAGGGAGGGGATTTATAAATATCCGCGCCGCCCTTTTTTTTTC
CCTGCGGGGGGGGGGGGTGCCTTCCTCC
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