DY262815

Overview
NameDY262815
Unique NameDY262815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1308
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262815 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.813e-18
Identity = 51/154 (33.12%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  406 ITRASLFCLFIVSTRGITANPLLALTKRGRIGHRFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 819
            ++  ++  ++ V  R         + K G +  +F+IE ++DL++NL  RG DL+++ GKPE ++  LAKA  A  VYAH+E   +EVK E+ +   ++            D G     +++  WGST+YH+DDLPF    +P  Y  FR+ V+
Sbjct:  101 VSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVE 254
[Close]
BLAST of DY262815 vs. ExPASy Swiss-Prot
Match: CRYD_IDILO (Cryptochrome DASH OS=Idiomarina loihiensis GN=cry PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.356e-12
Identity = 33/131 (25.19%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:  490 GRIGHRFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 873
            G+    FL +S+  LR  L+ RG  L+V  G  + +L EL      DA++  +   +      E+++  +  +      F     +TL+   +LPF+L ++P  +  FR+KV+ +    +++ ++ L  LP
Sbjct:   65 GKHRFTFLQQSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGLLQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSLP 190

HSP 2 Score: 38.891 bits (89), Expect = 7.356e-12
Identity = 20/57 (35.09%), Postives = 29/57 (50.88%), Query Frame = 3 
Query:  339 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 509
            R  +  FRNDLRV DN +L  A   S +++  +CF+P        G    G +R +F
Sbjct:   15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTF 71
The following BLAST results are available for this feature:
BLAST of DY262815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CRYD_SOLLC2.813e-1833.12Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_IDILO7.356e-1225.19Cryptochrome DASH OS=Idiomarina loihiensis GN=cry ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262815 ID=DY262815; Name=DY262815; organism=Citrus clementina; type=EST; length=1308bp
CAGAAAACCATTCCAATGAGGAACAAAACCCACTTGCGACTATCCCTTCT
CAATCACCATTTGCCACTCTTTCCCTCTCATTTTCTCTCCCCCAAGTCCT
CCCAGCCAACACTTTCTTCATTCAACCCAAAATTTCCACCTTATTTTCCC
ACCAACCAAACAAGGTCAAAGTCCCCACACAAGCCTCTACGCTTACCCAC
ATCTCTCTCTCCGCCTCCTCCACTCTCTCTCCTTCCAAAATTTCATTCAA
GTCCACACTCTCCGCAAACCCTCTTCAGAGCCCTCTCTCTTTAGGGCCCC
ACCGCCCCTTGGACCCGAACAATGGGGCCGCAATTCGTCGAGCTTCCATT
GTTTGGTTCCGCAACGACTTGCGGGTCCATGATAACGAATCTCTCAACAC
CGCCAATAACGAGAGCGTCTCTGTTTTGCCTGTTTATTGTTTCGACCCGA
GGGATTACGGCAAATCCTCTTCTGGCTTTGACAAAACGGGGCCGTATCGG
GCATCGTTTTTTGATTGAGTCAGTTTCTGACCTTCGCAAGAACTTGCAGG
CACGTGGGTCTGATCTCGTGGTGAGAGTGGGAAAGCCGGAGACTGTTCTG
GTCGAGTTGGCTAAAGCCATTGGAGCTGATGCAGTGTACGCGCACAGAGA
GGTGTCACATGATGAGGTTAAATCGGAGGAGAAGATTGAGGCAGCGATGA
AAGACGAGGGAATTGAAGTGAAGTACTTTTGGGGAAGCACTTTGTACCAT
CTTGATGATTTGCCGTTTAAGTTGGGGGAAATGCCGACTAATTATGGTGG
GTTTAGAGAGAAGGTTAAGGGCGTGGAGATTCGGAAGACGATTGAGGCAT
TGGATCAGTTGAAAGGATTGCCGTCTCGAGGAGATGTTGAGCCTGGTGAT
ATTCCTTCCTTGTGGATCTAGGTCTCAGCCAGAGTGCTGCAATGTCTCAA
GGTGGAAAGCCAGCTGCCAATTCTATTGAAGGAGGGGAAACTGAACCACT
GCAAAGGCTAAAAAAAATTGCAGCTAAATAACAAGAAAACCAACCCAAGG
GAAAACAGGGATGGCACCCAGGAAAACTTTAAGGGGGCAAAATTTCTCTG
GCAAAAATTCCCCCTGGCTTGCCCTGGGGAAGCCGTGCCCCCCCTTCCAT
GGTTGAAAAAGCAAAAAAAAAACGGCAAAAAAAATTTTTCGCCCCCCTAA
AAGGGAAAAAAAGGTGAAAAAGGGGGCCATCGGGGGGGGGGGAAATAAAA
TGGGTGTGAATGTTTGGAAATTGTGGGGGGGGGGGGGTTTTTCTCCAAAA
TATTAATA
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