DY262820

Overview
NameDY262820
Unique NameDY262820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.381e-14
Identity = 67/177 (37.85%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  578 PKYGVSSVCGRRRDMEDAVAVHPSFFRQNFETADD-----------ELHYFGVYDGHGCSHVAMRCRERLH-----ELVKEELESNKG-TDVAGCRGALERSFTRMEQEVNEFNERVVKATCRCELQTPECDAGGSTAVVAIVNPE*KVIGNWR*LENPFC-G*TARLLRLSSDYKP 1054
            P YGV+S+CGRR +MED+V+  P F + +  +  D             H+FGVYDGHG S VA  CRER+H     E+VKE+ E   G T     + AL  SF R++ E+    E V  A           +  GST+VVA+V P    + N        C G T   L LS D+KP
Sbjct:  111 PLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEI----ETVAHAP----------ETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTP--LALSVDHKP 271          
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.442e-13
Identity = 65/192 (33.85%), Postives = 87/192 (45.31%), Query Frame = 2
Query:  584 YGVSSVCGRRRDMEDAVAVHPSFFRQNFETA------------DDELHYFGVYDGHGCSHVAMRCRERLHELVKEELESNK-------GTDV-----AGCRGALERSFTRMEQEVNEFNERVVKATCRCELQTPECDAG----GSTAVVAIVNPE*KVIGNWR*LENPFCG*TARLLR-------LSSDYKP 1054
            +G  SV GRRR+MEDA+ V   F   + E A            +++  +F VYDGHG S VA  CRER+H ++ EE+   +       G DV     A  + A+   FTR++ EV                   E D G    GSTAVVA+V P   V+ N        CG +  +L        LSSD+KP
Sbjct:   91 HGAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEVG---------------GAEEADTGEQTVGSTAVVAVVGPRRIVVAN--------CGDSRAVLSRGGVAVPLSSDHKP 259          
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.292e-12
Identity = 65/179 (36.31%), Postives = 88/179 (49.16%), Query Frame = 2
Query:  584 YGVSSVCGRRRDMEDAVAVHPSFFRQNFETA-------DDELHYFGVYDGHGCSHVAMRCRERLHELVKEEL-------ESNKGTDVAGCRGALERSFTRMEQEVNEFNERVVKATCRCELQTPE-CDAGGSTAVVAIVNPE*KVIGNWR*LENPFCG*TARLLR-------LSSDYKP 1054
            +G  SV GRRR+MEDAVA+  +F     + A       + E  +F VYDGHG S VA  CR+R+H ++ EE+       +S  G DV   + A+  SF RM+ EV      V  A  R +   P      GSTAVVA+V     V+ N        CG +  +L        LS+D+KP
Sbjct:   78 HGSVSVIGRRREMEDAVAIERTFMASTGDGAGAIRGGGEGEEDFFAVYDGHGGSRVAEACRKRMHVVLAEEVSLRRLRGQSASGGDVR-WKEAMLASFARMDGEV---VGSVAAAAPRVDGTEPSGFRTVGSTAVVAVVGRRRIVVAN--------CGDSRAVLSRGGVALPLSTDHKP 244          
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.094e-11
Identity = 63/183 (34.43%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  578 PKYGVSSVCGRRRDMEDAVAVHPSFF-----RQNFETADDEL---------HYFGVYDGHGCSHVAMRCRERLHELVKEELESNKGTDVAGCRGALERSFTRMEQEVNEF---NERVVKATCRCELQTPECDAGGSTAVVAIVNPE*KVIGNWR*LENPFCG*TARLL-------RLSSDYKP 1054
            P +G  S+CGRR +MEDAV     FF          +  D L         H+FGVYDGHG + VA  CRERLH  + EEL   +G+      G++E      +  V+ F   +E V     R E   PE    GSTAVVA++     ++ N        CG +  +L        LS D+KP
Sbjct:  148 PLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRIEGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNASRGEAVAPE--TVGSTAVVAVICSSHIIVAN--------CGDSRAVLCRGKQPVPLSVDHKP 320          
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11
Identity = 62/183 (33.88%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  578 PKYGVSSVCGRRRDMEDAVAVHPSFFRQNF-----ETADDEL---------HYFGVYDGHGCSHVAMRCRERLHELVKEELESNK----GTDVAGCRG------ALERSFTRMEQEVNEFNERVVKATCRCELQTPECDAGGSTAVVAIVNPE*KVIGNWR*LENPFCG*TARLLRLSSDYKP 1054
            P +G+ S+CGRR +MED  AV P FF         + A D L         H+F VYDGHG   VA  CR+R+H ++ EEL   +    G+D++G         A    F+R++ EV         A        P  D  GSTAVVA+V     ++ N        C    + L LS D+KP
Sbjct:  123 PLWGLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHAVLTEELRRAEDDACGSDLSGLESKKLWEKAFVDCFSRVDAEVGG------NAASGAPPVAP--DTVGSTAVVAVVCSSHVIVANCGDSRAVLCR-GKQPLPLSLDHKP 296          
BLAST of DY262820 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  578 PKYGVSSVCGRRRDMEDAVAVHPSFFRQNFET--ADDE----------LHYFGVYDGHGCSHVAMRCRERLHELVKEELE----------SNKGTDVAGCRGALERSFTRMEQEV-NEFNERVVKATCRCELQTPECDAGGSTAVVAIVNPE*KVIGNWR*LENPFCG*T-ARLLR------LSSDYKPGTNGTN*PESQKPGGK 1102
            P +G  S+CG R +MEDAV   P F +   +    D E           H+FGVYDGHG + VA  C +R+H  + EE+E          + +G  V   +  ++  + +++ EV  + N  VV ++ R  L+    +  GSTAVVA+V     ++ N        CG + A LLR      LS D+KP          +K GGK
Sbjct:  187 PLWGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDHEGMSPSLPYLTSHFFGVYDGHGGAQVADYCHDRIHSALAEEIERIKEELCRRNTGEGRQVQWEKVFVD-CYLKVDDEVKGKINRPVVGSSDRMVLEAVSPETVGSTAVVALVCSSHIIVSN--------CGDSRAVLLRGKDSMPLSVDHKPDREDEY-ARIEKAGGK 381          
The following BLAST results are available for this feature:
BLAST of DY262820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
P2C77_ARATH1.381e-1437.85Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C08_ORYSJ4.442e-1333.85Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C51_ORYSJ1.292e-1236.31Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C06_ORYSJ1.094e-1134.43Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C53_ORYSJ1.429e-1133.88Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
P2C07_ARATH1.429e-1131.71Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AB11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262820 ID=DY262820; Name=DY262820; organism=Citrus clementina; type=EST; length=1268bp
TCAAACCCCATGGATTCTCTTTTCAAGACTCCTCTTGAGCGCGCAAACAT
TCTCTTTCACCCGTTCCATTTTCATTTTCTCATGTCGATCAATAATATAG
CGTGATTCATTAAAAAACGAAACCATTTTTGCTAACAAATTAAGCTCGCA
AGACAAGACATAACGAGAATCTTGAATTTCGTTACGAACTTCCTTGACAT
TAAAGAGTGTGATGGCGGAGATCTGCTGTGGAGTGGTGAGCGAGAGTGAG
GCAACGACGTCGTGCGAGACAAGCTCGCGTACGGCAAGGCGTAGGCGAAT
GGAGATCAGACGGTTCAAGTTCGTTACGGGCGTGGTCGCCTCGGATACTG
AGGAAAATGAGAGACCAAAACGGCAGAAGCTAGAGGCTTATCCGACGTCG
TTTTCTCGTGACTGGGAAAACGCGCTGGAGAACGGCGTTTCAGACGAAGG
CGAAATGCGAGATCAACAACAGACGAAGGTAGAAAATGGACGATCGAAAA
GAAAAGATGTGGTTTTACCGAGTGAGTCTTTGAGCACGTTACCCTTAACA
ACTGCTTCACTGGATCCAAACTCGAATCCTAAATACGGCGTCTCTTCTGT
TTGTGGAAGAAGAAGAGACATGGAAGATGCAGTAGCTGTTCATCCGTCGT
TTTTTCGCCAAAATTTCGAAACTGCTGATGATGAATTGCACTACTTCGGC
GTTTACGATGGCCACGGCTGCTCTCATGTGGCGATGAGATGTAGGGAAAG
GTTGCATGAGTTGGTGAAGGAAGAACTGGAGAGTAACAAGGGAACGGATG
TAGCGGGATGTAGAGGGGCGTTGGAGCGAAGCTTCACGCGTATGGAACAG
GAGGTGAATGAGTTTAACGAAAGAGTGGTGAAAGCCACCTGTAGGTGTGA
GCTTCAAACGCCTGAATGCGATGCCGGTGGGTCTACTGCTGTTGTCGCCA
TAGTAAACCCCGAATAAAAAGTGATTGGCAACTGGCGGTGACTCGAAAAC
CCTTTTTGTGGCTAAACCGCAAGGCTCCTACGTTTGTCGTCTGATTACAA
ACCCGGAACGAACGGAACAAATTAACCGGAATCCCAAAAACCGGGAGGGA
AGGGAAACCTAATGGGAAAGGGGCCGCGGGGTCCCTTGGGGGTTTTGGGC
CATTTTCCAAAAGAAGAAAGGGAAAAAAAACCCTTTAAAACCCCTATAAT
TTCAATTTTTAAAAACCACAGAGGAGGAAAAGCTGTGCGGGGAAATTTTG
CAACGGGGCCCGGGCGGA
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