DY262827

Overview
NameDY262827
Unique NameDY262827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1322
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: IKBA_PIG (NF-kappa-B inhibitor alpha OS=Sus scrofa GN=NFKBIA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 51/150 (34.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  269 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 697
            +N+  +T LH+A     PE+ E LL   E+       D  G  P+H A   G +  V +L       +L       N  G T LH A+  G+L IVELL+S GA +N+++   G TALH      N  L  LL++ GA+V+     G +P
Sbjct:  107 QNNLQQTPLHLAVITNQPEIAEALL---EAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 253          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: BARD1_MOUSE (BRCA1-associated RING domain protein 1 OS=Mus musculus GN=Bard1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  269 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 589
            RN    TLLH+A+  G    VE LL   ++ N  N  D  GW P+H A S G++ +VE+LL   A VN       + LH A   G + IV++L+S GA  N+ +  G
Sbjct:  412 RNHRGETLLHIASIKGDIPSVEYLL---QNGNDPNVKDHAGWTPLHEACSHGHLKVVELLLQHNALVNTPGYQNDSPLHDAVKSGHIDIVKVLLSHGASRNAVNIFG 515          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: ANR62_HUMAN (Ankyrin repeat domain-containing protein 62 OS=Homo sapiens GN=ANKRD62 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 48/175 (27.43%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  269 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 793
            R+  +RT L +A + G P VV  L++       +N  D E    +  A          +LL  GA+ N+++  G TALHYA     + +   L++ GA I ++ + G T+L    +     +   L+++  ++ A D  G+T L+ A    +  V   L++H  DV  +D  G+T
Sbjct:   54 RDKKNRTALLLACAHGRPGVVADLVA---RKCQLNLTDSENRTALIKAVQCQEEVCASILLEHGANPNVRDMYGNTALHYAIDNENISMARKLLAYGADIEARSQDGHTSLLLAVNRKKEQMVAFLLKKKPDLTAIDNFGRTALILAARNGSTSVVYQLLQHNIDVFCQDISGWT 225          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: ANKS6_HUMAN (Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens GN=ANKS6 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 52/172 (30.23%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  281 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP-IHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEG 787
            ++T   VA  C H ++V+ L   D    V    DEE   P I  A  +GN  +V+ +  +  + VNL N  G T L  AA  G L +V+LL+ R A ++ +D V G TAL +    GN  + + L+ +GA+V    K G T     ++  + +  L+ +     + V   +G
Sbjct:  258 EKTAFEVALDCKHRDLVDYL---DPLTTVRPKTDEEKRRPDIFHALKMGNFQLVKEIADEDPSHVNLVNGDGATPLMLAAVTGQLALVQLLVERHADVDKQDSVHGWTALMQATYHGNKEIVKYLLNQGADVTLRAKNGYTAFDLVMLLNDPDTELVRLLASVCMQVNKDKG 426          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: ANFY1_MOUSE (Ankyrin repeat and FYVE domain-containing protein 1 OS=Mus musculus GN=Ankfy1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 2
Query:  284 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS------------AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGAD 763
            +T LH+A +  HP+VV ++L  ++ AN ++A +     P  S            A   G  TI   LL  GA +N     G+T LH A  +   K    L+   A IN + + G TAL          + + +   GA++   D+ G  PL  A+    +++A  L+RHG D
Sbjct:  544 QTPLHMAIAYNHPDVVSVIL--EQKANALHATNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSGASINDTMSDGQTLLHMAIQRQDSKSALFLLEHQADINVRTQDGETALQLAIKHQLPLVVDAICTRGADMSVPDEKGNPPLWLALASNLEDIASTLVRHGCD 713          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: AKR1_YARLI (Palmitoyltransferase AKR1 OS=Yarrowia lipolytica GN=AKR1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  275 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYT 793
            +D  T LH AA        + L  V++ A V     +    P+H A   G V IV  L+  GAD    +  G  ALH A     + ++  L+ +G  ++ +D  G TALH  A  G++   ++L+  G++V  TD  G  PL   ++  ++     LI  G+D+  +  +G T
Sbjct:   82 EDGVTALHWAAVNNRISTCQYL--VEQGAVVDAKGGQLNGTPLHWACRRGLVYIVHYLIQNGADPLRSDVQGYNALHLATHSSNVMLLVYLLHQGLPVDCQDPNGRTALHWAAYQGDALSVDVLLRWGSDVKITDTQGFLPLHWGIVNGSRNSLARLIEEGSDMYAKSSDGKT 252          
BLAST of DY262827 vs. ExPASy Swiss-Prot
Match: AKR1_EMENI (Palmitoyltransferase akr1 OS=Emericella nidulans GN=akr1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 55/166 (33.13%), Postives = 72/166 (43.37%), Query Frame = 2
Query:  305 ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEVALLLIRHGADVDVEDKEGYTVL 799
            A  G   V++ L   DE     N  DEEG  P+H AA      + + L+  GADVN K  +   T   +AA +    IV LL+  GA     D  G   LH     GN+ L  LL+ +   VD  D+ G T LM A          L +R GA+ +  D  G   L
Sbjct:   72 ARIGEVSVMQKLF--DEKKFTANYSDEEGITPLHWAAINNQYAMCKFLIDSGADVNAKGGESVATPAMWAAQRCHYYIVHLLLQYGADPLLTDVQGYNILHLATIDGNAFLLVLLLHQEIPVDVVDQQGHTGLMWAAYKGYPACVDLFLRWGANPNAVDDGGLAPL 235          
The following BLAST results are available for this feature:
BLAST of DY262827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
IKBA_PIG9.814e-1134.00NF-kappa-B inhibitor alpha OS=Sus scrofa GN=NFKBIA... [more]
BARD1_MOUSE9.814e-1138.32BRCA1-associated RING domain protein 1 OS=Mus musc... [more]
ANR62_HUMAN9.814e-1127.43Ankyrin repeat domain-containing protein 62 OS=Hom... [more]
ANKS6_HUMAN9.814e-1130.23Ankyrin repeat and SAM domain-containing protein 6... [more]
ANFY1_MOUSE9.814e-1129.07Ankyrin repeat and FYVE domain-containing protein ... [more]
AKR1_YARLI9.814e-1128.90Palmitoyltransferase AKR1 OS=Yarrowia lipolytica G... [more]
AKR1_EMENI9.814e-1133.13Palmitoyltransferase akr1 OS=Emericella nidulans G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262827 ID=DY262827; Name=DY262827; organism=Citrus clementina; type=EST; length=1322bp
TGACGAACCGCGCACCGGGTGAGAACCGGACACAACCGAACCGCACCATA
CCATTGCGCACCGCTTTCGACTTGCAACTAGCTCGCCGCTGGACCAAATC
ACACCGTCAAAACTCTAATTCTCGGCAAATTGACAGTACAATTCCGGTAT
GGACATGGACATCGATCAAACAATCAAGGACAAAGACCTCTTCAAAGCCG
CCGAAACTGGAGATTCCTCAACATTCAAATCCCTCTCAAAACAGCAGCTC
TTAAAATCTCTCTCCTTGCGGAACGACGACGACCGCACCCTCCTCCACGT
CGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAATATTGTTGAGTGTTG
ATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAAGAAGGGTGGGCTCCG
ATTCATTCTGCGGCTAGCATTGGCAATGTGACAATCGTGGAAATGTTGTT
AAGCAAAGGAGCTGATGTAAATTTGAAGAATGATGGTGGGCGAACCGCTC
TTCACTATGCTGCCAGCAAGGGATGGTTGAAGATTGTGGAACTTCTGATC
TCACGTGGTGCAAAAATTAACTCCAAGGACAAGGTTGGTTGCACAGCATT
GCACCGGGGAGCTAGTACAGGGAATTCAGCATTGTGTGAACTCTTAATTG
AAGAAGGAGCAGAGGTTGATGCTACTGATAAAGCCGGACAAACTCCTCTT
ATGAATGCAGTGATTTGCTATAACAAAGAGGTTGCTCTTCTTCTAATAAG
ACATGGAGCGGATGTTGATGTGGAAGACAAGGAAGGCTACACTGTGCTGG
GTCGGGCTTCAAATGATTTTAGACCCATACTGATTGATGCTGCCAAAGCT
ATGCTCGAAGGATGAATTCTTAGTTTGTAGCAAAAAGTGTAGCTAATGGT
AAGTGGCAGGCTGTGCATGCTGAAAGAATATTGTACTGCAAGGACAAGAC
CATGAACAATTTTTGGAAAAAATAGGCAAAGAATCATTGGTCACTTTAGC
TTATGTCCTAGCTTTTTAAAATTATGAGGAACAATGGAAAGAGGATTTTT
CNTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGGCCGCTCAAA
ATAACCTCCGAGGGGGCCAAGCTAACCCGAACCCACCTTTCCTGGAAAAA
GGGGCCCCAAAAAAGGAGGCTAAAAAAAAAAAAGGGACCGGGCCCCCCCT
TTTTAAAACCCTTTGGAGCGGGAAAAAAAGGCCGACCGTTGGGTAATTTT
TTTGGGTTAAGGAAACCCACCATTTTTCTGTTGGGGGTGGGGGGGAAAAA
AAGGGTGGAACAAAAAAACCAC
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