DY262830

Overview
NameDY262830
Unique NameDY262830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1308
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262830 vs. ExPASy Swiss-Prot
Match: EIF3F_CAEEL (Eukaryotic translation initiation factor 3 subunit F OS=Caenorhabditis elegans GN=eif-3.F PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.661e-11
Identity = 67/288 (23.26%), Postives = 125/288 (43.40%), Query Frame = 3 
Query:   54 VIVHPLVLLSIVDNYNRVAKDTRK-----RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYV-------PNPVLVIIDVQPKELG-----IPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL-----LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAELIKAFSVKT-NDMMLVIYLSSLIRSVIALH 848
            V VHP V +++VD + R  K + K     + +G L+G   KG++ V+N +A+PF E + D  I   D  +++ M S  K+ +  E  VGW+ T   +  + L  H  +   +        +P +V++ +     G     +P +AY   +     A      +F  +  E+AA   E + ++ +      R  + T  S L    T     ++ L+  L  +    D+  + + P + +I   L D+     N    E +      T  D ++V YL+ L ++ + +H
Sbjct:    7 VNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVE---DVNKNGEKPGDAQIGRQLMDIVTASSNNMQPEKLDTLVKNTLRDYVMVSYLAKLTQTQLQVH 288
The following BLAST results are available for this feature:
BLAST of DY262830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EIF3F_CAEEL9.661e-1123.26Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262830 ID=DY262830; Name=DY262830; organism=Citrus clementina; type=EST; length=1308bp
CGAATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAG
AAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAA
CCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTA
GCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTT
GAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCA
TGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCG
TAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATT
CACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGA
TGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTG
AGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACAC
GTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCA
CTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGG
TCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCGTGAG
ATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGAATCA
CGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAATCTGA
ATGTGGCTGAATTAATCAAGGCCTTTTCAGTAAAAACAAATGATATGATG
TTGGTTATATATCTTTCGTCCCTCATCCGGAGTGTTATTGCACTGCATAA
CTTAATCAATAACAAGATTTTGAACAAAGAACACGAAAAGACTGAGGACG
CAAAGCCAACGGCAGTTCCAACTGCCAGTTCAAGTTAAAATCAAGTTTGT
TGTGCTTTGGGGCTTCAGCCATTACCGAACTGGGGCATTGAAATGGAGAG
AGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGACCTTTTTTT
TGCCAAATGGGGAAGGTTACTTTGGCCCAAGGTTTTCTTTCCCGGAACCT
CCCAAAAAAAACTTGGCCTCAAAAAAGCTTGGAAATTCAAACCCCTTTTT
TTGGTTTTCATTTTTTTTTTTTTTTTTCCAAATTTTTTTTTTTTAAAGAC
AAAAGGGAAATAAATAATTTTTTTTGGCGCGGTTCTAAATACTAGGTTTA
AAAAAAACCAAATTTTTAAAAATATAATATTCCAAAAAAACAGTGGGTGG
GGGGTGGT
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