DY262895

Overview
NameDY262895
Unique NameDY262895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1317
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262895 vs. ExPASy Swiss-Prot
Match: TRFE_XENTR (Serotransferrin OS=Xenopus tropicalis GN=tf PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 57/205 (27.80%), Postives = 95/205 (46.34%), Query Frame = 3
Query:  423 IKWCAV-RDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLN-FSMKAIANEVYCDHAQ---SYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVN-HIKGSTPTFDSGKISDIEIA-SSFFSEVCAPGEFEGTGMCSGC-GIENGSC--NSNSLYFGESGAFKVLVEELG 1007
            ++WCA  + ++  C  LV+     E  T  CV++ +  ECL + +   AD I ++ G  Y   L  +++K I  E Y  H +    Y AVAV+     +++      + +  +SCH      AGWN  +   ++     ++      +E A S FF   C PG  E   +C  C G +   C  ++N  Y+  +GAFK L ++ G
Sbjct:   27 VRWCAKSKSEFSKCRDLVNTCKNKE-ITLSCVEKSSTDECLTAIQNDRADAICVDGGDVYKGSLQPYNLKPIMAENYGSHTEPDTCYYAVAVV-----KKSSTFTFDELRDKRSCHTGIGKTAGWNVIIGLLLEKQLLKWEGPDTESLEKAVSKFFKASCVPGAKE-PKLCQQCAGKKEHKCARSNNEPYYNYAGAFKCLQDDKG 224          

HSP 2 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 53/210 (25.24%), Postives = 88/210 (41.90%), Query Frame = 3
Query:  423 IKWCAV-RDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY-------CDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGC---------GIENGSCNSNSLYFGESGAFKVLVEE 1001
            ++WC   + +   C+   +I   S +    C +  TA++C+    KG+AD + L+ G  YTA     +  +  E Y       C    S          + ++   ++  + +G K+CH +    AGWN PV  I   T   D          +S+  E CAPG    + +C  C           +  S +++  Y G SGAF+ LVE+
Sbjct:  354 VRWCTQSKAEKTKCDDWTTISGGSIE----CTEAATAEDCILQILKGDADAVTLDGGYMYTAG-QCGLVPVMGEYYDLDDLTPCQRRSSQAKGVYYAVAIAKKGTKVSWKNLRGVKTCHTAVGRTAGWNIPVGLITNETNNCD---------FASYVGESCAPGSDVKSNLCKLCIGDPAKPLDSAKKCSPSASEAYHGYSGAFRCLVEK 549          
BLAST of DY262895 vs. ExPASy Swiss-Prot
Match: TRFEB_XENLA (Serotransferrin-B OS=Xenopus laevis GN=tf-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.567e-11
Identity = 56/205 (27.32%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  423 IKWCAV-RDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLN-FSMKAIANEVYCDHAQS---YDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVN-HIKGSTPTFDSGKISDIEIA-SSFFSEVCAPGEFEGTGMCSGC-GIENGSC--NSNSLYFGESGAFKVLVEELG 1007
            ++WC   + +   C  LV+     E  T  CV++    ECL + ++  AD I ++ G  Y   L  +++K I  E Y    ++   Y AVAV+     +++      + K  +SCH      AGWN  +   ++    ++       +E A S FF   C PG  E   +C  C G +   C  ++N  Y+  +GAFK L ++ G
Sbjct:   26 VRWCVKSKSELNKCRDLVNTCKNKE-ITLSCVEKPNTDECLTAIQEDRADAICVDGGDVYKGSLQPYNLKPIMAENYGSQTETDTCYYAVAVV-----KKSSTFTFDELKDKRSCHTGIGKTAGWNIIIGLLLEKKLLSWGGPDTESLEKAVSRFFKASCVPGAKE-PNLCQQCAGKKEHKCSRSNNEPYYNYAGAFKCLQDDKG 223          

HSP 2 Score: 69.3218 bits (168), Expect = 5.718e-11
Identity = 50/210 (23.81%), Postives = 90/210 (42.86%), Query Frame = 3
Query:  423 IKWCAV-RDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY-------CDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGC---------GIENGSCNSNSLYFGESGAFKVLVEE 1001
            ++WC   + +   C+   +I   + +    C +  +A++C+    KG+AD + L+ G  YTA     +  +  E Y       C    S          + ++   ++  + +G K+CH +    AGWN PV  I   T   D          +S+  + CAPG    + +C+ C           +  S +++  Y+G SGAF+ LVE+
Sbjct:  352 VRWCTQSKAEKNKCDDWTTISGGAIE----CTEAASAEDCIVQILKGDADAVTLDGGYMYTAG-QCGLVPVMGEYYDQDDLTPCQRRSSGTKGVYYAVAIAKKGTKVSWSNLRGVKTCHTAVGRTAGWNIPVGLITNETKNCD---------FASYVGQSCAPGSDVKSKLCALCIGDPEKRLESSKKCSPSASEAYYGYSGAFRCLVEK 547          
BLAST of DY262895 vs. ExPASy Swiss-Prot
Match: SAX_RANCA (Saxiphilin OS=Rana catesbeiana PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 5.718e-11
Identity = 55/186 (29.57%), Postives = 76/186 (40.86%), Query Frame = 3
Query:  510 CVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIAN--------------EVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGC------GIENGSC--NSNSLYFGESGAFKVLVEE 1001
            C +    + C+    KGEAD + LE    Y A +   + A+                  Y D   +  AVA++ +     N  IN  + KG KSCH      AGW  PV+ I+           SDI+   SFF E CAPG    + +C  C         N  C  +    Y+G  GAF+ LVE+
Sbjct:  518 CTEASCPKGCVKQILKGEADAVKLEVQYMYEALMCGLLPAVEEYHNKDDFGPCKTPGSPYTDFG-TLRAVALVKKS----NKDINWNNIKGKKSCHTGVGDIAGWVIPVSLIRRQNDN------SDID---SFFGESCAPGSDTKSNLCKLCIGDPKNSAANTKCSLSDKEAYYGNQGAFRCLVEK 689          
The following BLAST results are available for this feature:
BLAST of DY262895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TRFE_XENTR1.042e-1227.80Serotransferrin OS=Xenopus tropicalis GN=tf PE=2 S... [more]
TRFEB_XENLA2.567e-1127.32Serotransferrin-B OS=Xenopus laevis GN=tf-B PE=2 S... [more]
SAX_RANCA5.718e-1129.57Saxiphilin OS=Rana catesbeiana PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BA08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262895 ID=DY262895; Name=DY262895; organism=Citrus clementina; type=EST; length=1317bp
CTCTCTCGATATTCACATCACCATCACAATTCAAAATACGCACACAAGAT
CCCCAGATGCAGATCTTAACAGCAACTGCTCTTCTTCTTCATTTGCTCGC
TTTTATCTGGCCAATTCAGGGTTTTGCGCCATCGCCAGCCCCGGAACCCA
ACTCCAGTTTCTCGTCCGTTCAACACTTTCCTCCAGCGCATGCACCATCA
TTAAACGCTTCAGACGGTGAGAGGTCCGTTTTCGCGCCATCTCCAACTCC
GGCGTCACCCACGAGTTTAGCATCCGCACAACGCTCGCCTCCCCTACCGT
CAGTGCCGAATGCATCCCCGGCGCCGGCGCCATTGACCGTGGAGGAAGGA
AGGGAGGAATTTGGTGATCACGTTGTGCCAAGTGGTGAGGTGGGTGATGA
CGAGGAAGGATCAGAAGCGACAATCAAATGGTGTGCTGTCAGGGATCAGT
ACGAGGATTGTGAGTATCTCGTCAGCATCATCAGCCAATCTGAAGATTAC
ACGTGGAAATGTGTCAAAAGAGACACAGCACAAGAGTGTTTAGATTCAGC
AAGAAAAGGGGAAGCAGATATAATAAATCTAGAAGCAGGGCTAGCTTACA
CAGCATTTCTCAATTTCTCTATGAAAGCCATTGCAAATGAAGTCTACTGT
GACCATGCTCAAAGCTATGATGCTGTTGCAGTTATAAACAGAAAGGTTTG
CCAAGAAAATGGAGGCATCAATTTGATGGATTTCAAGGGACATAAATCTT
GCCATGGAAGTTACTCCACAGCAGCTGGCTGGAACTATCCCGTTAACCAT
ATCAAAGGATCAACGCCAACATTTGATTCTGGCAAAATAAGCGACATCGA
AATTGCTTCAAGTTTTTTCTCTGAGGTTTGTGCCCCGGGAGAATTTGAAG
GAACGGGAATGTGCAGTGGCTGTGGCATTGAAAATGGTTCTTGCAATTCA
AATAGTTTGTATTTTGGAGAATCGGGAGCATTTAAGGTGCTGGTTGAGGA
GTTGGGAAAATATTTGCATTTGTGAAAAGTGAAACTTGCCTTGGTGTAAT
CCCAAAAAGGGGCCCCCAAACCCAATCTTGGGCATCAAAAATCAATCAAA
AAAATTTTTGGTATTCTTTTTCTCCAAAGGGGGTTTTTCAAAAAAAAAAA
AGGGGCTATTCCCGGAATTTTTGTTTCCTTTTTAAAAATTTTTCCCCGGC
CAAAGGTGTTTTATTGGGGGAAAAAAAAACCCCTTCCGCCCCCAAAAAAA
AAAAAAAATAAGTGTTTATTTTTTTTTTTCACACAAAAATTTTTAAAAAA
AAAGAGCGCCTCCCAAC
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