DY262912

Overview
NameDY262912
Unique NameDY262912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_BEII9 (60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.766e-17
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G   A++A+V +L + ++ +TS ++IA  GT +ANGD+ +G++I+ A +K  GN   +  +       EL +  GM  DRGYLSPYFITN +     L DPYI++ EKK+S+
Sbjct:  115 DLKRGIDHAVEAIVADLKANSKKVTSNDEIAQVGTISANGDKSVGDMISTAMQKV-GNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDPYILVHEKKLSS 229          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.766e-17
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G   A++A+V +L+  A+ I + E+IA   T +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN +     L DPYI+I EKK+SN
Sbjct:  115 DLKRGIDAAVEAVVADLFKKAKKIQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSN 229          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.766e-17
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G  +A+ A+V  L + A+ I++  +IA  GT +ANGD  IG  +A+A E+   + +  + + KT  + EL++  GM  DRGYLSPYF+TN         DPYI+I EKK+SN
Sbjct:  115 DLKRGIDLAVGAIVAELKANARKISNNSEIAQVGTISANGDAEIGRFLAEAMERVGNDGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSN 229          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH603_RHIEC (60 kDa chaperonin 3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.766e-17
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D R+G  + + A+V  + + A+ + S  +IA  G  AANGD  +GE+IAKA EK  GN   +  +       EL +  GM  DRGYLSPYF+TN +     L DPYI++ EKK+ +
Sbjct:  115 DLRRGIDLGVSAIVKEIQARARKVKSSGEIAQVGAIAANGDATVGEMIAKAMEKV-GNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDPYILLHEKKLGS 229          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.805e-17
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G   A+ A V  L   ++P    + I   GT +AN +  +G++IA+A +K  G    +  +  +    EL++  GM  DRGYLSPYFIT+ ++    L DPYI+I +KK+SN
Sbjct:  115 DLKRGVDKAVVAAVEELKKLSKPCEDSKAIGQVGTISANAEESVGKIIAEAMDKV-GKEGVITVEEGSGLDNELEVVEGMQFDRGYLSPYFITDQQSMAADLDDPYILIHDKKISN 229          

HSP 2 Score: 33.8834 bits (76), Expect = 1.805e-17
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E + LA+LV+N +    K C  K  GFG+ +KA L  I
Sbjct:  255 EGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDI 292          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH605_BRAJA (60 kDa chaperonin 5 OS=Bradyrhizobium japonicum GN=groL5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.806e-17
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  471 AEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKV 824
            A   D ++G      A +  L + A P+ S  +     T +A+ D  IGEL+A A EK  G+ +  + + KT  ++ L +  GM  DRG+LSPYFIT+    E VL+DPY+++ + K+
Sbjct:  111 ASAIDLKRGLDRGTQAAIAALRAMATPVKSRAEKVQVATISAHNDASIGELVADAIEKVGGDGVISVEESKTTETL-LDVVEGMKFDRGFLSPYFITDADRMESVLQDPYVLLCDHKI 227          

HSP 2 Score: 35.4242 bits (80), Expect = 1.806e-17
Identity = 16/38 (42.11%), Postives = 24/38 (63.16%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E + LA+L++N++    KAC  K  GFG+ +KA L  I
Sbjct:  255 EGEALATLIVNQLRGVLKACAVKAPGFGDRRKAMLEDI 292          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.306e-17
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRDIMAQ 887
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +PYI++++KKVS+      + E+ PV + +A+
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKV-GRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSS------IRELLPVLESVAK 242          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.306e-17
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRDIMAQ 887
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +PYI++++KKVS+      + E+ PV + +A+
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKV-GRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSS------IRELLPVLESVAK 242          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH60_CHRVI (60 kDa chaperonin OS=Chromatium vinosum GN=groL PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.347e-17
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G   A++A    L   ++P      IA  GT +AN D  IG +IA+A EK  G    +  +  T    EL +  GM  DRGYLSPYFI N +++   L  PYI++ +KK+SN
Sbjct:  115 DLKRGMDKAVEAATEELKKLSKPCPRPMAIAQVGTISANSDDSIGTIIAEAMEKV-GKEGVITVEDGTSLQNELDVVEGMQFDRGYLSPYFINNQQSQSAELDAPYILLYDKKISN 229          

HSP 2 Score: 33.8834 bits (76), Expect = 2.347e-17
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 1
Query:  913 ENDLLASLVLNEVATATKACVKKLLGFGESKKANLSGI 1026
            E + LA+LV+N +    K C  K  GFG+ +KA L  I
Sbjct:  255 EGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLQDI 292          
BLAST of DY262912 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.012e-17
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  483 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSN 830
            D ++G   A++A+V  L   A+ +T  ++IA  GT +ANGD+ IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYFITN +     L +PY++I EKK+++
Sbjct:  115 DLKRGIDKAVEAIVEELKKNARKVTKNDEIAQVGTISANGDQEIGRFLAQAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFITNQEKMRVELDEPYLLIHEKKLAS 229          
The following BLAST results are available for this feature:
BLAST of DY262912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BEII91.766e-1740.5260 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]
CH60_BARBK1.766e-1743.1060 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH603_RHIL31.766e-1741.3860 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH603_RHIEC1.766e-1741.3860 kDa chaperonin 3 OS=Rhizobium etli (strain CFN ... [more]
CH60_NITOC1.805e-1737.0760 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH605_BRAJA1.806e-1735.5960 kDa chaperonin 5 OS=Bradyrhizobium japonicum GN... [more]
CH602_VIBVY2.306e-1740.0060 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU2.306e-1740.0060 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH60_CHRVI2.347e-1738.7960 kDa chaperonin OS=Chromatium vinosum GN=groL PE... [more]
CH602_MESSB3.012e-1740.5260 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262912 ID=DY262912; Name=DY262912; organism=Citrus clementina; type=EST; length=1281bp
ATCGAATTCCTCTGTCCTTTCTGCGCAACAAAATCACAAACGATGTTGCG
CCATGCCTCTAACCTCGCCTCCAAAGTCAGGTTGCTTGATAACAATTTTC
AGCCGGTGATGATTCATTCATTCATTTATTAGTGTTTTTTGTTTCCTTTT
TTCAAATAATAATAACTAATTCTGGCTTGGCTTATTCAGTTCAATTGATT
AATTTCGTTGAGTTAATTTCGTTGAATTTAATTCTGTGTCAGGTTCATTT
AACTCGGAGCAGACAGTATACCGCGGCGGAAGTCACTAAAAGATTTTTGG
ATTGTGAAACATCTTCTGGATTTTCTTAATTAAGAAATTAGATTTGCTGT
GAATGGGAATGGAGTTAATTAATGGATACAGATCATCTGATCAAATTCAA
TTGACATCTATCTTCTGTCTGCAGGCACCAATTCTAAAGTTAAAAGGGAG
AATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGACAAGGGGCT
AGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCACAGCACAACC
CATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTGCAGCAAATG
GTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAGAAAGGTTGG
GGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACCCAGTATTGA
ACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATTTGTCACCTT
ACTTCATCACCAATCATAAGACGAAAGAATGTGTTTTACGAGATCCTTAT
ATCATGATCCTTGAGAAAAAGGTTTCGAACTGCGTCTTCTTTGACTTATT
GACAGAGATTGGACCAGTTAGAGATATAATGGCACAGATGTACTGATCAT
TGCTGAAGATATGAAAATGATCTTCTAGCAAGTCTTGTCTTAAATGAAGT
GGCTACAGCAACCAAAGCTTGTGTCAAAAAACTTCTTGGATTTGGAGAAA
GTAAGAAAGCTAACCTTTCGGGAATTGGCCAAAATCCCGTTATGGAAAGT
CATGAACAGGAAAAGATTTTAAATGCTAATCTTTTGGCCATGCTGAAAAA
ATACGGGAACCAAAGGATAAAACGGGTTACCCTTCTTTTGAAGGGTTGGC
AAAGGAACGAAAAAATTTTTTTAAGGGGAAAAATTTCAAGGGGAAAAATT
TAAAAAATTTTTCCTTAAAAAAAATTTTTAAAAACACACCCTTTTATCCC
TCGCCTTTCCTTTATAAAAGAGAAATTGGGG
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