DY262919

Overview
NameDY262919
Unique NameDY262919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1297
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_ECODH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.031e-38
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 1
Query:  265 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETLRR 966
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD  E L R
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLER 242          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_ECOBW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=kdsB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.031e-38
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 1
Query:  265 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETLRR 966
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD  E L R
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLER 242          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEAE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa GN=kdsB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.183e-38
Identity = 96/241 (39.83%), Postives = 134/241 (55.60%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDASETLRR 966
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+ FSR  +P+ +      +       PY  H+GI +Y   FL  +    P  L+  E LEQL+ L +G ++ V    ++   GVD  E L R
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_ESCF3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=kdsB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.183e-38
Identity = 98/240 (40.83%), Postives = 139/240 (57.92%), Query Frame = 1
Query:  265 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDASETLRR 966
            V IIPARFAS+R  GKPL++I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V + L      + + A      E+AF+PN VK V+D+ GYA+YFSR  IP+++     G       +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V   +     GVD +E L R
Sbjct:    4 VVIIPARFASTRLPGKPLLDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAAPVHSAEEAFNPNVVKVVLDSEGYALYFSRATIPWDRDRFAKGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAEQVPGTGVDTAEDLER 242          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_ECO27 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=kdsB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.183e-38
Identity = 99/240 (41.25%), Postives = 139/240 (57.92%), Query Frame = 1
Query:  265 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETLRR 966
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++   V         +L HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD  E L+R
Sbjct:    4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFVKDLETVGDNFLRHLGIYGYRAGFIRRYVTWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLKR 242          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEAB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=kdsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.046e-37
Identity = 96/241 (39.83%), Postives = 133/241 (55.19%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDASETLRR 966
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+ FSR  +P+ +      +       PY  H+GI +Y   FL  +    P  L+  E LEQL+ L +G ++ V    +    GVD  E L R
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARETMLPGVDTPEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA8 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=kdsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.046e-37
Identity = 96/241 (39.83%), Postives = 133/241 (55.19%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDASETLRR 966
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +VVATDDE+I   CQ FGA+ ++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P+A  +T    +    A F+PN VK   D  G A+ FSR  +P+ +      +       PY  H+GI +Y   FL  +    P  L+  E LEQL+ L +G ++ V    +    GVD  E L R
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARETMLPGVDTPEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEA7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=kdsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.046e-37
Identity = 95/241 (39.42%), Postives = 135/241 (56.02%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHGVDASETLRR 966
            +IPAR+AS+R  GKPL +I G+PMIQR W +++  +    +V+ATDDE+I   CQ FGA+V++T     +GT+R  E   +L    D IVVN+QGDEPLI P +ID V   L A P++  +T    +    A F+PN VK   D +G A+ FSR  +P+ +      +       PY  H+GI +Y   FL  +    P  L+  E LEQL+ L +G ++ V    +    GVD  E L R
Sbjct:    8 VIPARYASTRLPGKPLQDIAGQPMIQRVWNQAR-KSAASRVVIATDDERILAACQGFGAEVLLTRADHNSGTDRLEEVASRLGLAADAIVVNVQGDEPLIPPALIDQVAANLAAHPESAIATLAEPIHDVAALFNPNVVKVATDVNGLALTFSRAPLPWARDAFAGDRDSLPDGVPYRRHIGIYAYRVGFLADFVAWGPCWLENTESLEQLRALWHGVRIHVADARETMLPGVDTPEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PELPB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.046e-37
Identity = 90/239 (37.66%), Postives = 144/239 (60.25%), Query Frame = 1
Query:  259 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF---DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            + V +IPAR  SSR + K L ++ G+P+I RTW ++  +   + +VVATD  +IA      GA+V+MTS +   GTER  EA + +E   D+ VN+QGDEPLI PE ID  ++   +      ST V  L+P+D     DP++VK V+D  G+A+YFSR  IP+ ++  + P      H+G+ ++ ++ L+ +  L P+ L+  E LEQL++LENG++++ +    +  GV+  E L +
Sbjct:    2 KAVILIPARLDSSRLDRKMLADLEGEPLIVRTWRQALKSRLAEKVVVATDSREIAAVLDACGAEVVMTSPTASCGTERIAEAARHIEG--DVFVNLQGDEPLISPENIDLALEPFFSENPPDCSTLVLPLRPDDHVQIEDPHQVKVVMDAKGFALYFSRSAIPFQRN--MRPTTIVYRHIGLYAFSADVLQKFASLPPSMLEEAESLEQLRLLENGFRIQCVTTLVDNPGVNTVEDLEQ 236          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_FRATM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=kdsB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.046e-37
Identity = 95/238 (39.92%), Postives = 137/238 (57.56%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF---PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK-VDHEAHGVDASETLRR 966
            +IPAR  S+R   K L +I GKPMIQR +E+    +  D +++ATD +KI +  + F A V++T +  ++GT+R  EA+ KL     DIVVN+QGDEPLI  E I+   + L    +AV ST    +   ED ++PN VK V D + YA+YFSR  IP+ +      Q     +  H+GI +Y   FLK Y  L  +P++  E LEQL+VL NGYK+ + +       GVD  + L +
Sbjct:    7 VIPARLKSTRLPNKMLADIAGKPMIQRVYEQVT-KSKFDSIIIATDSQKIKDIAESFDAKVVLTRDDHQSGTDRIAEAVTKLGFADEDIVVNVQGDEPLIPIENIERAAQLLIDKSEAVVSTLCEKITDVEDIYNPNNVKVVFDKNNYALYFSRASIPFERGFSEKEQINISEFFRHIGIYAYRVAFLKHYAELTVSPIEKYEALEQLRVLYNGYKIAIEQSAKSTLAGVDTLQDLEK 243          
The following BLAST results are available for this feature:
BLAST of DY262919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_ECODH7.031e-3841.253-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECOBW7.031e-3841.253-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEAE9.183e-3839.833-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ESCF39.183e-3840.833-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_ECO279.183e-3841.253-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEAB2.046e-3739.833-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA82.046e-3739.833-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEA72.046e-3739.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PELPB2.046e-3737.663-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FRATM2.046e-3739.923-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262919 ID=DY262919; Name=DY262919; organism=Citrus clementina; type=EST; length=1297bp
TCAAACTTCAAAGCAATTAGGAAGCTTCGTTGAATAAGATGTGGATTGTG
GATCAGTATGCCAGTTTCTCATAGTCGTGTAAAATCAGAATTAGAGAGTG
AGAGAGATTAAAAGATGAGCTCAAAATCAATATGTTCGCCGTCCGAATCT
TCTTCCTCAACAAAGTCGTGGATCGTGCACGGCATTGTAGCCGGAGCAGC
AATTGCTGTTGCCGTCGGTGCGCGCGCCTATCTGGGTCGATCGAAGAACT
TTCGGAGCCGGGTCGTGGGTATCATACCCGCCCGTTTCGCTTCTTCTCGC
TTCGAGGGCAAACCCCTTGTTAATATCCTCGGTAAACCTATGATCCAGAG
AACATGGGAAAGGTCCAAACTGGCAACCACATTGGATCACCTGGTTGTGG
CAACGGATGATGAGAAGATTGCAGAATGCTGCCAACAATTTGGTGCTGAT
GTGATAATGACTTCAGAATCTTGCCGAAATGGTACTGAAAGATGCAACGA
AGCATTACAAAAGCTGGAGAAGAAGTACGATATTGTTGTCAATATTCAGG
GAGATGAACCTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCT
CTGCAGGCAGCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAA
ACCTGAAGATGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATC
ATGGTTATGCCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCA
GGAAAAGTCAATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAG
CTATGACTCAAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCC
TACAACTAGAAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTAT
AAGATGAAGGTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTTC
AGAGACGTTGAGAAGATGAATCATTTATGCGTGAGAAAACTTGGTCTAGT
TTTAGTGACTAATCTGATTAAAAAGAAGGATGCAAATTTGCCTGTACAGC
AGTCAGCTGGCTCATGTTAATTAAGTTGGGATGGGGGGGGGGTTCTTTCC
CCCGTGGAGGTCCCTTCCCCGGGAAAAAAATTTTATTTAATTTTGCCTGG
CCGGGGTTTTTCCCATTTTTGGGGAATACCCGGAAGTTTTTTTGGGGGGG
TGCTTTTTGACACCAATTGCTTTTGGGAGAAAAAACAAAATTTTTTAGAA
TTTAAAAAAGGTGTTTTTTATTTTTGTTAAAAAAAATTATTATCTTT
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