DY262919

Overview
NameDY262919
Unique NameDY262919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1297
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_FRAP2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.811e-40
Identity = 95/219 (43.38%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP---YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 912
            +IPAR  S+R  GK L +I GKPMIQR +E+    +    +++ATD ++I E  + FGA VI+T +   +GT+R  EA+ KL     DIVVN+QGDEPLI  E I+   + L   P+AV ST    + + ED ++PN VK V D + YA+YFSR  IP+ +    N Q     +  H+GI +Y   FLK Y  L  +P++  E LEQL+VL NGYK+ +
Sbjct:    7 VIPARLKSTRLPGKMLADIAGKPMIQRVYEQVA-KSKFKSIIIATDSQEIKEVAENFGAKVILTRDDHESGTDRIAEAVTKLGFADEDIVVNVQGDEPLIPVENIEQAAQLLIEKPEAVVSTLCERITEAEDIYNPNNVKVVFDKNNYALYFSRASIPFERGFSENHQVSISEFFRHIGIYTYRVGFLKHYAELAISPIEKYEALEQLRVLYNGYKIAI 224          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 101/237 (42.62%), Postives = 141/237 (59.49%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETL 960
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD  E L
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDL 240          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_VIBCH (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 101/237 (42.62%), Postives = 141/237 (59.49%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETL 960
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD  E L
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDL 240          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_VIBC3 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 101/237 (42.62%), Postives = 141/237 (59.49%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETL 960
            +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD  E L
Sbjct:    6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDL 240          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEU2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 98/241 (40.66%), Postives = 139/241 (57.68%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSG------KVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI-KVDHEAHGVDASETLRR 966
            +IPAR+ SSRF GKPL  I GKPM+Q  WE++   ++ + +V+ATDD +I E CQ FGA+V++T +   +GT+R  E   +L    D IVVN+QGDEP+I P +ID V   L A P+A  ST    +    A F+PN VK   D +G A+ FSR  +P+ +        ++    PY  H+GI +Y + FL  +    P  L+  E LEQL+ L NG ++ V   ++    GVD  E L R
Sbjct:    8 VIPARYGSSRFPGKPLKTIAGKPMVQLVWEQA-CKSSAERVVIATDDARIVEACQAFGAEVLLTRDDHNSGTDRLAEVAAQLGLAADAIVVNVQGDEPMIPPAVIDQVASNLAAHPEAGMSTLAEPIDDVAALFNPNIVKVATDINGLALTFSRAPLPWARDALAANRDQLPAGVPYRRHIGIYAYRAGFLHDFVSWGPCWLENTESLEQLRALWNGVRIHVADALEAPPGGVDTPEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_PSEPF (3-deoxy-manno-octulosonate cytidylyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 101/241 (41.91%), Postives = 144/241 (59.75%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP-----YNKSGKVNPQ-FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVI-KVDHEAHGVDASETLRR 966
            +IP+R+AS+R  GKPL++I GKPMIQ  WE++   ++   +VVATDD +I E C+ FGA+V++T E   +GT+R  E   KL  + D IVVN+QGDEPLI P +ID V   L A  +A  +T    ++  E  F+PN VK V D +G A+ FSR  +P     + K   V P+  PY  H+GI +Y + FL+ +    P  L+  E LEQL+ L +G ++ V   +     GVD +E L R
Sbjct:    8 VIPSRYASTRLPGKPLLDIAGKPMIQHVWEQAS-KSSASRVVVATDDARIVEACKAFGAEVVLTREDHNSGTDRLAEVAAKLGLEPDAIVVNVQGDEPLIPPSVIDQVAANLAAHTEARMATLAEPIEDVETLFNPNVVKVVSDLNGLALTFSRATLPLARDAFAKRRDVLPEGVPYRRHIGIYAYRAGFLQDFVSWGPCWLENTESLEQLRALWHGVRIHVADALIAPPTGVDTAEDLER 247          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_MANSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 104/246 (42.28%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-------SGKVNPQ-----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETLRR 966
            IIPARFASSR  GKPL +I GKPMI    E+++L+     +VVATD+E++ +  +QFG +V MTS    +GTER  E ++ L    D I+VNIQGDEPLI P I+  V + L      + S AV   +  + F+PN VK + D  GY +YFSR  IP+N+       SG++  +       YL H+GI +Y + F+K Y    P+ L+  E LEQL+VL  G K+ V +  +  A GVD +E L +
Sbjct:    7 IIPARFASSRLPGKPLADIAGKPMIIHVLEKARLSGAT-RVVVATDNEEVKQAVEQFGGEVCMTSAKHNSGTERLAEVVETLNIPDDEIIVNIQGDEPLIPPVIVSQVAENLCKFKVNMASLAVKIHESAELFNPNAVKVLTDKDGYVLYFSRAPIPWNRDAFARLNSGELKQEELDLADHYLRHIGIYAYRAGFIKQYVQWEPSALEQIESLEQLRVLWYGEKIHVELAKEIPAVGVDTAEDLEK 251          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_CHRVO (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chromobacterium violaceum GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.281e-39
Identity = 100/240 (41.67%), Postives = 132/240 (55.00%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ------FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDASETLRR 966
            +IPAR ASSR  GKPL +I GKPM+ R  E++  +     +VVATD   I   C   G + ++T E   +GT+R  E   KL    D +VVN+QGDEPLI+PE+I+ + + L  A   V + A       D F+PN VK  +D HG A+YFSR  IPY +      +       P   H+G+  Y + FL  Y GL P PL+  E LEQL+VL +GY + V   D   A GVD  E L R
Sbjct:    7 VIPARMASSRLPGKPLADIAGKPMVVRVAEQAAKSRAA-RVVVATDHADILAACAAHGVEAVLTREDHASGTDRLAEVAAKLALPDDALVVNVQGDEPLIQPELINRLAELLAGADAPVATLAHALHDAADHFNPNVVKVALDKHGRALYFSRAPIPYARDAYAADRSALPAGLPVYRHIGMYGYRAGFLAAYAGLEPGPLEQYEALEQLRVLWHGYGIAVALADEAPAAGVDTPEDLER 245          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_SHEPW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=kdsB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.673e-39
Identity = 93/234 (39.74%), Postives = 138/234 (58.97%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD--AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLR 963
            +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L  + VATDD++I +  + FG  V+MTS    +GT+R  +A+ +L   + D+VVN+QGD+PLI+P  I+ ++   +  P    + +      + E+  DP  VK V DN   A+YFSR  IP+   G+    +P   HLG+ +Y   F++ +  L    L+  E LEQL+ LE+G+K+KV     ++  VD  E +R
Sbjct:    6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTDIYVATDDDRIKDAVEGFGGKVVMTSAEAASGTDRIEDAITQLGLAEDDLVVNLQGDQPLIDPISIEQIISLFERHPGEFGMATLGFQITEEEELNDPKHVKLVFDNEFNALYFSRARIPF---GRDTDDYPVYKHLGVYAYTRKFVQTFAKLPLGRLEDLEKLEQLRALEHGHKIKVAISAFDSPEVDTPEDIR 236          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_KLEP7 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=kdsB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.186e-39
Identity = 101/240 (42.08%), Postives = 140/240 (58.33%), Query Frame = 1
Query:  265 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDASETLRR 966
            V IIPARFAS+R  GKPL +I GKPMI    ER++  +  D ++VATD E +A   +  G +V MT    ++GTER  E ++K     D I+VNIQGDEP+I P I+  V + L A+   + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++      +       L H+GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD  E L R
Sbjct:    4 VVIIPARFASTRLPGKPLQDINGKPMIVHVLERAR-ESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTIIVNIQGDEPMIPPAIVRQVAENLAASSSGMATLAVPIHDAEEAFNPNAVKVVMDAKGYALYFSRATIPWDRDRFAQSRETIGDSLLRHIGIYGYRAGFIRRYVSWAPSPLEQIEMLEQLRVLWYGEKIHVAVAAEVPGTGVDTPEDLER 242          
The following BLAST results are available for this feature:
BLAST of DY262919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_FRAP29.811e-4043.383-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCM1.281e-3942.623-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBCH1.281e-3942.623-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VIBC31.281e-3942.623-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEU21.281e-3940.663-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_PSEPF1.281e-3941.913-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_MANSM1.281e-3942.283-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHRVO1.281e-3941.673-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SHEPW1.673e-3939.743-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_KLEP72.186e-3942.083-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262919 ID=DY262919; Name=DY262919; organism=Citrus clementina; type=EST; length=1297bp
TCAAACTTCAAAGCAATTAGGAAGCTTCGTTGAATAAGATGTGGATTGTG
GATCAGTATGCCAGTTTCTCATAGTCGTGTAAAATCAGAATTAGAGAGTG
AGAGAGATTAAAAGATGAGCTCAAAATCAATATGTTCGCCGTCCGAATCT
TCTTCCTCAACAAAGTCGTGGATCGTGCACGGCATTGTAGCCGGAGCAGC
AATTGCTGTTGCCGTCGGTGCGCGCGCCTATCTGGGTCGATCGAAGAACT
TTCGGAGCCGGGTCGTGGGTATCATACCCGCCCGTTTCGCTTCTTCTCGC
TTCGAGGGCAAACCCCTTGTTAATATCCTCGGTAAACCTATGATCCAGAG
AACATGGGAAAGGTCCAAACTGGCAACCACATTGGATCACCTGGTTGTGG
CAACGGATGATGAGAAGATTGCAGAATGCTGCCAACAATTTGGTGCTGAT
GTGATAATGACTTCAGAATCTTGCCGAAATGGTACTGAAAGATGCAACGA
AGCATTACAAAAGCTGGAGAAGAAGTACGATATTGTTGTCAATATTCAGG
GAGATGAACCTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCT
CTGCAGGCAGCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAA
ACCTGAAGATGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATC
ATGGTTATGCCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCA
GGAAAAGTCAATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAG
CTATGACTCAAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCC
TACAACTAGAAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTAT
AAGATGAAGGTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTTC
AGAGACGTTGAGAAGATGAATCATTTATGCGTGAGAAAACTTGGTCTAGT
TTTAGTGACTAATCTGATTAAAAAGAAGGATGCAAATTTGCCTGTACAGC
AGTCAGCTGGCTCATGTTAATTAAGTTGGGATGGGGGGGGGGTTCTTTCC
CCCGTGGAGGTCCCTTCCCCGGGAAAAAAATTTTATTTAATTTTGCCTGG
CCGGGGTTTTTCCCATTTTTGGGGAATACCCGGAAGTTTTTTTGGGGGGG
TGCTTTTTGACACCAATTGCTTTTGGGAGAAAAAACAAAATTTTTTAGAA
TTTAAAAAAGGTGTTTTTTATTTTTGTTAAAAAAAATTATTATCTTT
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