DY262930

Overview
NameDY262930
Unique NameDY262930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: Y661_METTH (Putative ammonium transporter MTH_661 OS=Methanobacterium thermoautotrophicum GN=MTH_661 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.135e-18
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = -3
Query:  541 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVSP 786
            FQ TFAAITV L++G+V+ R+   +W+ F+PLW    Y   A  +WGGGFL   GV D++GG V+H++SGIA L  A    P
Sbjct:  104 FQMTFAAITVALISGAVVERIKFSSWILFIPLWFALVYVPVAHWVWGGGFLQNLGVHDFAGGIVVHITSGIAALALALVTGP 185          

HSP 2 Score: 25.0238 bits (53), Expect = 4.135e-18
Identity = 15/51 (29.41%), Postives = 24/51 (47.06%), Query Frame = -1
Query:  846 FYAFGAVFICWVLVWYGMAFGDQLLPFWGKGAPALGQKYLLVEPESQKAPT 998
            F + G V + W L  YG+ FG  +      G+  +G   + +   S+ APT
Sbjct:   47 FVSLGIVSLLWFLFGYGLIFGGDVSGI--IGSHQVGISLINLGSASKYAPT 95          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: AMT_AQUAE (Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.330e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = -3
Query:  556 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAA 786
            FQ TFA IT  L++GS +GRM   AW+ F  LW +F Y   A  +WGGGFL   G +D++GG V+H+++GIAGL  A
Sbjct:  125 FQLTFATITTALISGSFVGRMKFSAWILFAILWSVFVYPPVAHWVWGGGFLANDGALDFAGGTVVHINAGIAGLVGA 201          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: MEP3_YEAST (Ammonium transporter MEP3 OS=Saccharomyces cerevisiae GN=MEP3 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.908e-13
Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = -3
Query:  547 LVY--FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWV 795
            L+Y  FQ  F  + + ++AG+   R  +   M F+ ++    Y    + +W  GG+ YQWGV+D++GG  I + S +AG   +Y++
Sbjct:  109 LIYAIFQMMFMCVALSIIAGATAERGKLFPHMVFLFVFATLVYCPITYWIWAPGGWAYQWGVLDWAGGGNIEILSAVAGFVYSYFL 194          

HSP 2 Score: 44.2838 bits (103), Expect = 1.908e-13
Identity = 30/103 (29.13%), Postives = 48/103 (46.60%), Query Frame = -1
Query:  123 YIYIYVQVGPRLKSDKERFPPNNVXXXXXXXXXXXXXWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAG 431
            ++Y Y  +G R ++    F P+NV             W  FN  +  + ++ S  A +NT ++A T  + W  LD     K S +G   G++ GLV  TP +G
Sbjct:  188 FVYSYF-LGRRKENLLINFRPHNVSMVTLGTSILWFGWLLFNAASSLSPNMRSVYAFMNTCLSATTGGMTWCLLDYRSEKKWSTVGLCSGIICGLVAATPSSG 289          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: NRGA_BACSU (Ammonium transporter nrgA OS=Bacillus subtilis GN=nrgA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.446e-13
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  556 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAA 786
            FQ TFA +T  +++G+   RM   A++ F  LW    YT  A  +WGGG++ Q G +D++GG V+H+SSG+AGL  A
Sbjct:  100 FQMTFAVLTTAIISGAFAERMRFGAFLLFSVLWASLVYTPVAHWVWGGGWIGQLGALDFAGGNVVHISSGVAGLVLA 176          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: AMTB_ECOLI (Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.878e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -3
Query:  547 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWV 792
            V FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+H+++ IAGL  AY +
Sbjct:  123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLI 204          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: AMTB_ECO57 (Ammonia channel OS=Escherichia coli O157:H7 GN=amtB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.878e-13
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -3
Query:  547 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWV 792
            V FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+H+++ IAGL  AY +
Sbjct:  123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLI 204          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: AMT_MYCTU (Probable ammonia channel OS=Mycobacterium tuberculosis GN=amt PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.104e-11
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = -3
Query:  556 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW---------GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAA 792
            V FQ  FA ITV L++G+V  R+   AW+ F  LW  F Y   A  ++         GG    +   ID++GG  +H+++G+A L  A
Sbjct:  123 VAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGGWIANKLHAIDFAGGTAVHINAGVAALMLA 210          

HSP 2 Score: 33.8834 bits (76), Expect = 2.104e-11
Identity = 23/83 (27.71%), Postives = 35/83 (42.17%), Query Frame = -1
Query:  840 GFPFYLRQHVQKKVGSQFTLMVFYAFGAVFICWVLVWYGMAFGDQL-------LPFWG-KGAPALGQKYLLVEPESQKAPTKL 1064
            G  F+    V+ K      +M   A G V + W L  Y +AFGD +         +WG KG   +G   +  +P +Q A   +
Sbjct:   31 GLAFFYGGMVRSKSVLNMIMMSISAMGVVTVLWALYGYSIAFGDDVGNIAGNPSQYWGLKG--LIGVNAVAADPSTQTAAVNI 111          
BLAST of DY262930 vs. ExPASy Swiss-Prot
Match: AMT_MYCBO (Probable ammonia channel OS=Mycobacterium bovis GN=amt PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.104e-11
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = -3
Query:  556 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW---------GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAA 792
            V FQ  FA ITV L++G+V  R+   AW+ F  LW  F Y   A  ++         GG    +   ID++GG  +H+++G+A L  A
Sbjct:  123 VAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGGWIANKLHAIDFAGGTAVHINAGVAALMLA 210          

HSP 2 Score: 33.8834 bits (76), Expect = 2.104e-11
Identity = 23/83 (27.71%), Postives = 35/83 (42.17%), Query Frame = -1
Query:  840 GFPFYLRQHVQKKVGSQFTLMVFYAFGAVFICWVLVWYGMAFGDQL-------LPFWG-KGAPALGQKYLLVEPESQKAPTKL 1064
            G  F+    V+ K      +M   A G V + W L  Y +AFGD +         +WG KG   +G   +  +P +Q A   +
Sbjct:   31 GLAFFYGGMVRSKSVLNMIMMSISAMGVVTVLWALYGYSIAFGDDVGNIAGNPSQYWGLKG--LIGVNAVAADPSTQTAAVNI 111          
The following BLAST results are available for this feature:
BLAST of DY262930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
Y661_METTH4.135e-1848.78Putative ammonium transporter MTH_661 OS=Methanoba... [more]
AMT_AQUAE3.330e-1650.65Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV... [more]
MEP3_YEAST1.908e-1331.40Ammonium transporter MEP3 OS=Saccharomyces cerevis... [more]
NRGA_BACSU3.446e-1344.16Ammonium transporter nrgA OS=Bacillus subtilis GN=... [more]
AMTB_ECOLI5.878e-1343.90Ammonia channel OS=Escherichia coli (strain K12) G... [more]
AMTB_ECO575.878e-1343.90Ammonia channel OS=Escherichia coli O157:H7 GN=amt... [more]
AMT_MYCTU2.104e-1135.23Probable ammonia channel OS=Mycobacterium tubercul... [more]
AMT_MYCBO2.104e-1135.23Probable ammonia channel OS=Mycobacterium bovis GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BD11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262930 ID=DY262930; Name=DY262930; organism=Citrus clementina; type=EST; length=1280bp
AAAGAATGCCCATTACAATAGCCGCCCATGATTGTACCAGCCCTGATATA
TTTTATGCTTCTGTTAGAATACAAAACCCAGTGATTTTATACCATGAAAA
TTGAAACGCGGTGTTGATGCATACCAGCTCCTGGGGTGATGCAAACAAGG
CCAGTCATCATGCCCTGAACAGCTCCGATAACTGAAGGCTTCCCAAAGAA
GATAACATCAAGACATGTCCAAACAAGAAGGCTCGTGGCCGCCGCTACAT
TTGTGTTTAGAATAGCGATCGAAGAGGCGATATGAGCAGCATAAGGAGCC
CCACCGTTGAAACCCGACCATCCCATCCACAGCAGCCCGGCTCCCGCAAG
CATGAGCAGCACATTATTCGGAGGAAACCTCTCTTTGTCACTCTTTAGCC
TGGGTCCAACCTGTACATATATATATATATATATATGAAGACAATTAAAG
TGATTTCATCAACAAATCAATTATATGTTTCATAATAATGCAATTGATCG
GGGTATGTTTGTAACTATTGTGCTTCGGTTACGTGGTTAATGGACTTACC
CAATAGGCGGCAGTGAGACCGGCAATTCCTGAGGAGACGTGAATAACATA
GCCACCAGAATAATCAATGACACCCCACTGATAAAGGAAGCCACCACCCC
AAAGACTAAAAGCACCTACAGTGTAAGAAAACATGAGCCATAACGGCACA
AAGGCCATCCAGGCCCTGATATTCATTCGACCAAGAACGGAGCCGGCTAG
CAAAATAACCGTGATCGCAGCAAAAGTGAACTGAAAATACACAAGTGTAG
CCATAACATAGAAAGGTTCAGTGGTCACAGTTTTGCCATCAACTTCGTGG
GTGCTTTCTGGGACTCTGGCTCGACCAACAGGTACTTTTGGCCTAGAGCA
GGGGCGCCCTTGCCCCAAAAAGGGAGCAGTTGGTCACCAAAAGCCATGCC
GTACCATACAAGGACCCAACAAATGAACACGGCACCAAAGGCATAAAACA
CCATGAGGGTGAATTGACTGCCCACTTTTTTCTGAACATGCTGGCGTAAA
TAAAAAGGAAACCCGGCATGGTTTGGAATCCGAACAAGGGCCAATCCCCT
CTCCTGCCCTGCCCGGTTCCCCTTTGTTGAACCAATCGGGGAACTGCCCG
GGCCCCCCCCTTTTGGTAAACCCTTTTGGAAATTTGGAGGAAAAAACACC
TGGGCCTCGAGGGGGAAAAACCCCCCCCTTCGTGGAAAAAAAAAAAATAT
TTTTTTTTTTAAAAAAGTGTTTTTTTTTTT
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