DY262931

Overview
NameDY262931
Unique NameDY262931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.464e-12
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  377 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLE---VELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDN 715
            F V+ YN+L D  A     +LY + P   L+W++RK++I+ E+   +ADI+  QEV+  Q      VELK RGY G +  ++            +DGCAIF++  +F L+ +  +EFN+L + ++
Sbjct:  184 FSVMCYNVLCDKYATR---QLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANS 305          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.464e-12
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  377 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLE---VELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDN 715
            F V+ YN+L D  A     +LY + P   L+W++RK++I+ E+   +ADI+  QEV+  Q      VELK RGY G +  ++            +DGCAIF++  +F L+ +  +EFN+L + ++
Sbjct:  189 FSVMCYNVLCDKYATR---QLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANS 310          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.464e-12
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  377 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLE---VELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDN 715
            F V+ YN+L D  A     +LY + P   L+W++RK++I+ E+   +ADI+  QEV+  Q      VELK RGY G +  ++            +DGCAIF++  +F L+ +  +EFN+L + ++
Sbjct:  189 FSVMCYNVLCDKYATR---QLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANS 310          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CCR4_NEUCR (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neurospora crassa GN=ccr-4 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.464e-12
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  284 VQSRPRPRPPKPLDYRNWEHSKASLPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEV--DRFQD-LEVELKFRGYTGI-W---KMRTGN-----AIDGCAIFWRASRFKLLYEEGIE-----------------FNKLGLRDNVAQICVLE 739
            ++  P P PP P   R     +  + P  ER  V+++NIL D  A ++   +Y + P   L WE+RK  IL E+     D++C QE+  D F+D    EL    Y G+ W   K +T N     A+DGCAIF++ S++ LL ++ I+                 FN++  +DN+  IC  E
Sbjct:  367 LEQAPVPLPPSP---RKPIVVQEDVSPSLERIKVMTWNILCDKFATTN---MYGYTPTGALSWEYRKERILQEIRDRDVDMLCLQEIATDVFRDFFSPELAQNDYKGVHWPRPKAKTMNEKDAAAVDGCAIFYKGSKWILLDKQLIDYANIAINRPDMKNQHDIFNRVMPKDNIGIICFFE 541          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CN6LA_XENLA (CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.524e-12
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  311 PKPLDYRNWEHSKAS---LPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEV---ELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDN 715
            P+ L +R W   K     LP  S  F V+ YN+L D  A     +LY + P   L+WE+RK+ I+ E+    ADI+  QEV+  Q   +    L+ RGY G +  ++            +DGCAIF+R  +F L+ +  +EFN++ + ++
Sbjct:  161 PEQLPHRPWITLKERDQILPSVS--FTVMCYNVLCDKYATR---QLYGYCPSWALNWEYRKKGIMDEIISCDADIISLQEVETEQYFTLFMPALEERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAMANS 305          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: PDE12_HUMAN (2',5'-phosphodiesterase 12 OS=Homo sapiens GN=PDE12 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 6.174e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  386 LSYNILADYLALSH--RSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFRGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEF 691
            +SYNILAD  A +   R+ LY +   + L+ ++R+  I  EL  ++AD++C QEVDR  F D L   L+  G  G+++++     +G A F+R S+F LL +  I F
Sbjct:  298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQH---EGLATFYRKSKFSLLSQHDISF 401          

HSP 2 Score: 28.1054 bits (61), Expect = 6.174e-12
Identity = 16/40 (40.00%), Postives = 19/40 (47.50%), Query Frame = 1
Query:  925 PVVLCGDFNCTPRV---HYTLLSKAKVD----LSGGEEIR 1023
            PV+ CGDFN TP     H+ +      D     S GEE R
Sbjct:  490 PVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEER 529          

HSP 3 Score: 26.5646 bits (57), Expect = 6.174e-12
Identity = 12/35 (34.29%), Postives = 22/35 (62.86%), Query Frame = 3
Query:  765 ILQLS--QQAQHILKKVAICNIHVLFNPKRGEIKL 863
            +LQ+S  Q  +   K++ + N H+ ++PK G I+L
Sbjct:  434 VLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRL 468          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: PDE12_BOVIN (2',5'-phosphodiesterase 12 OS=Bos taurus GN=PDE12 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.174e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  386 LSYNILADYLALSH--RSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFRGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNK 697
            +SYNILAD  A +   R+ LY +   + L+ ++R+  I  EL  ++AD++C QEVDR  F D L   L+  G  G+++++     +G A F+R S+F LL +  I F++
Sbjct:  298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIKQH---EGLATFYRKSKFSLLSQHDIAFHE 403          

HSP 2 Score: 28.1054 bits (61), Expect = 6.174e-12
Identity = 16/40 (40.00%), Postives = 19/40 (47.50%), Query Frame = 1
Query:  925 PVVLCGDFNCTPRV---HYTLLSKAKVD----LSGGEEIR 1023
            PV+ CGDFN TP     H+ +      D     S GEE R
Sbjct:  490 PVIFCGDFNSTPSTGMYHFVINGSIAEDHEDWTSNGEEER 529          

HSP 3 Score: 26.9498 bits (58), Expect = 6.174e-12
Identity = 11/37 (29.73%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  753 ISLKILQLSQQAQHILKKVAICNIHVLFNPKRGEIKL 863
            + + +LQ ++ +    KK+ + N H+ ++PK G I+L
Sbjct:  435 VQVSVLQSTKDSS---KKICVANTHLYWHPKGGYIRL 468          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CN6LB_XENLA (CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis GN=cnot6l-B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.719e-11
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  311 PKPLDYRNWEHSKAS---LPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEV---ELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDN 715
            P+ L  R W   K     LP  S  F V+ +N+L D  A     +LY + P   L+WE+RK+ I+ E+    ADI+  QEV+  Q   +    LK RGY G +  ++            +DGCAIF+R  +F L+ +  +EFN++ + ++
Sbjct:  161 PEQLPQRPWITLKERDQILP--SVPFTVMCFNVLCDKYATR---QLYGYCPSWALNWEYRKKGIMEEIVSCDADIISLQEVETEQYYTLFMPALKERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAMANS 305          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CCR4_NEOFI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.719e-11
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  287 QSRPRPRPPKPLDYRNWEHSKASLPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEV---ELKFRGYTGIWKMR---------TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLR 709
            +  P   PP   D+   + + +S    +++  VLSYN L D  A       Y + P  +L WE+R+  IL EL    +DI+C QE+D+    E    +L +  Y G++  R             +DGCA F++AS+F LL ++ I F +  +R
Sbjct:  351 EEMPVHLPPPDRDWIVLDETASSSNHRTDKVTVLSYNTLCDSSATQSH---YGYAPARVLSWEFRRELILNELRSHDSDIICLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKCVDGCATFFKASKFILLDKQLINFGQTAVR 500          
BLAST of DY262931 vs. ExPASy Swiss-Prot
Match: CCR4_CANGA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Candida glabrata GN=CCR4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.245e-11
Identity = 42/146 (28.77%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  308 PPKPLDYRNWEHSKASLPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDL-EVELKFRGYTGIWKMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLR 709
            P K  D         S     + F +LSYN L  + A     K+Y + P   L W++R+  +  ++  ++ DI+C QEV+   F+D  +  L+  GYTG++  +T            +DGC  F++ S+FK+L++E ++F+ L ++
Sbjct:  515 PEKEYDTVQEAERNLSSDMQKKSFTMLSYNTLCQHYATP---KMYRYTPSWALSWDYRREKLKEQILNFNTDIICLQEVEAKTFEDFWQPLLEKHGYTGLFHAKTRAKTMQSKDSKKVDGCCAFYKTSKFKMLFKECVDFSGLWMK 657          
The following BLAST results are available for this feature:
BLAST of DY262931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CNOT6_XENLA3.464e-1234.40CCR4-NOT transcription complex subunit 6 OS=Xenopu... [more]
CNOT6_RAT3.464e-1234.40CCR4-NOT transcription complex subunit 6 OS=Rattus... [more]
CNOT6_MOUSE3.464e-1234.40CCR4-NOT transcription complex subunit 6 OS=Mus mu... [more]
CCR4_NEUCR3.464e-1232.04Glucose-repressible alcohol dehydrogenase transcri... [more]
CN6LA_XENLA4.524e-1232.67CCR4-NOT transcription complex subunit 6-like-A OS... [more]
PDE12_HUMAN6.174e-1237.382',5'-phosphodiesterase 12 OS=Homo sapiens GN=PDE1... [more]
PDE12_BOVIN6.174e-1236.702',5'-phosphodiesterase 12 OS=Bos taurus GN=PDE12 ... [more]
CN6LB_XENLA1.719e-1132.67CCR4-NOT transcription complex subunit 6-like-B OS... [more]
CCR4_NEOFI1.719e-1130.72Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_CANGA2.245e-1128.77Glucose-repressible alcohol dehydrogenase transcri... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BD12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262931 ID=DY262931; Name=DY262931; organism=Citrus clementina; type=EST; length=1189bp
CAGAGGTGGTAGAAGCCACAGGAGAGGCTTCTCCGACAGACCTTTTAACG
GCGCAAACGGCCGTTTCGTTAGCGGAGACTCGCATATTAGCTCAGTAAGT
AACTCCAACCGCGGCGTCCGTCAAGGAAACTACACGGCGGTTCCGCCTGC
ACCGTTTTATCAAAACCAGCCGTTTCGGCAACCTCCGCCTTACAATCAGA
ACCAGCAGTTTAGGCCGCCTCCGTTATATAATCGAAATCCACAGTTTAGG
CGACCTCGTCCTCCGTTTGATCAAAATCAAGCGGTCCAGTCGCGGCCACG
ACCGCGGCCTCCGAAGCCGTTGGACTATCGGAATTGGGAGCATTCAAAGG
CATCTCTGCCTCCTTACTCTGAGCGATTTGTAGTTCTCTCCTATAACATA
CTAGCTGATTACCTTGCTCTTAGTCACCGGAGCAAACTTTACTTTCATAT
ACCTAGACATTTGTTGGACTGGGAATGGAGGAAGAGAAGTATATTGTTTG
AGCTTGGACTCTGGTCAGCTGACATAATGTGTTTTCAGGAGGTTGATAGA
TTTCAAGATCTAGAGGTGGAGTTGAAGTTTCGGGGATACACTGGCATCTG
GAAGATGCGAACTGGCAATGCAATTGATGGATGTGCAATCTTTTGGCGTG
CTTCAAGATTCAAGTTGCTTTATGAGGAAGGCATAGAGTTCAATAAGCTT
GGACTTCGGGATAATGTTGCTCAGATATGCGTGCTTGAGTTATTGAGTCA
AAATTTCACTGAAAATTCTGCAGCTCTCCCAACAAGCTCAGCACATTCTA
AAAAAAGTTGCCATATGCAACATTCATGTGCTTTTCAATCCCAAAAGAGG
AGAAATCAAGCTTGGGCCAGGTTAGGACGCTTCTGGAAAAAGCCCATGCT
GTTTCAAAGACTTGAAATGATGCTCCAGTTGTTCTGTGTGGGGATTTTAA
CTGCACACCAAGAGTCCACTATACACTTTTATCTAAAGCAAAAGTAGATT
TGTCTGGAGGGGAAGAGATAAGGGATCAGGAAAAGCTTCTGGCGAAAATT
CGGGAACACCTCCCCCCATTTCCAGGGTTCAGTCAAATGGATCAACGCAA
GGGCCCCCCCGAGGGGGGGAATCAGTGGTGGAGGGGTCCCCCCCCCCAAA
CATTTGGGAGGAGGGAAAAAAAAAGGGAAAGGGGGAAAA
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