DY262933

Overview
NameDY262933
Unique NameDY262933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1350
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.612e-16
Identity = 73/277 (26.35%), Postives = 122/277 (44.04%), Query Frame = 1
Query:  130 ILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGALN----------NVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAARENFS 924
            +L+F+ G  EI          M +L++S   +   L + P++S +  + Q  +F     G RK I++TNIAE+S+TV  + YVID    +  V +      +L++   S                  CYRL  +  + N +    VPE+ R  LG+ +                  + PP   +I  ++  L  +GAL           + G LT LG  + + P++  L K++++G   GCLDE L I + LS+ + F  P  +  +    + NFS
Sbjct:  234 VLVFLPGLGEINY--------MHELLTSLVHK--RLQVYPLHSSVALEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSRGYCYRLVHKDFWDNSIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMPFRQHLDGYRNKVNFS 500          
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.782e-15
Identity = 73/283 (25.80%), Postives = 119/283 (42.05%), Query Frame = 1
Query:   67 DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGALN----------NVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRP 879
            D  E+  K        S    +L+F+ G  EI          M +L+++   +   L + P++S +  + Q  +F     G RK I++TNIAE+S+TV  + YVID    +  V +      +L++   S                  CYRL     + + +    VPE+ R  LG+ V                  + PP   +I  ++  L  +GAL           + G LT LG  + + P+   L K++++G   GCLDE L I + LS+ + F  P
Sbjct:  213 DMKESGNKTWSGAQFVSERSSVLVFLPGLGEINY--------MHELLTNMIHK--RLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIHRDFWDSAIPDHVVPEMLRCPLGSTVLKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFTMP 485          
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.328e-15
Identity = 72/283 (25.44%), Postives = 119/283 (42.05%), Query Frame = 1
Query:   67 DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGAL----------NNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRP 879
            D  E+  K        S    +L+F+ G  EI          M +L+++   +   L + P++S +  + Q  +F     G RK I++TNIAE+S+TV  + YVID    +  V +      +L++   S                  CYRL     + + +    VPE+ R  LG+ +                  + PP   +I  ++  L  +GAL           + G LT LG  + + P+   L K++++G   GCLDE L I + LS+ + F  P
Sbjct:  212 DMKESGNKTWSGAQFVSERSSVLVFLPGLGEINY--------MHELLTNMIHK--RLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIPRDFWDSAIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAALSLKNFFTMP 484          
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: YR366_MIMIV (Putative ATP-dependent RNA helicase R366 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R366 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.109e-12
Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   64 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLI------SSTTREVPELLI-----LPIYSQLPADLQ---AKIFEKAKEGT--RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEI 576
            +++++  +K+ + +  ++  GDIL+FMTGQ +I  +  A+       I      S  + E  EL++     L  Y++   D++   ++I  +  +GT  R  I+ATN+AE S+T+  + YV+DTGY K+ VY+P  G+      P+S                   Y LY+ +  +N      + +I
Sbjct:  916 KNFIDYGIKKTIELANSTTNGDILLFMTGQADIHKSIKAINAATPPNIVALGYYSELSEETKELIVKIHQTLASYTRYKEDVELDESEITRRVPKGTYTRAIIIATNVAEASITLKNLKYVVDTGYNKVVVYDPIDGVYDTWTLPISFSSAMQRRGRVGRLSSGDFYALYSLNKVINNKTAYKIADI 1102          
The following BLAST results are available for this feature:
BLAST of DY262933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
TDRD9_HUMAN1.612e-1626.35Putative ATP-dependent RNA helicase TDRD9 OS=Homo ... [more]
TDRD9_RAT1.782e-1525.80Putative ATP-dependent RNA helicase TDRD9 OS=Rattu... [more]
TDRD9_MOUSE2.328e-1525.44Putative ATP-dependent RNA helicase TDRD9 OS=Mus m... [more]
YR366_MIMIV4.109e-1226.74Putative ATP-dependent RNA helicase R366 OS=Acanth... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BE02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262933 ID=DY262933; Name=DY262933; organism=Citrus clementina; type=EST; length=1350bp
CCAATATTCCACATTCCTGGACGAACCTTTCCTGTGAATACTTTGTACAG
TAAAACCCCATGTGAGGACTATGTTGAAGCTGCAGTAAAGCAGGCTATGA
CTATCCACATCACCAGCCCTCCAGGCGACATCCTAATCTTCATGACTGGC
CAAGATGAGATTGAGGCAGCATGTTTTGCCCTTAAGGAGCGCATGGAACA
GCTCATCTCCTCCACCACGAGAGAGGTTCCTGAACTCTTAATACTGCCAA
TATACTCGCAGTTGCCAGCTGACTTGCAAGCAAAGATATTCGAGAAAGCT
AAAGAGGGCACTCGCAAATGCATTGTTGCCACCAACATCGCTGAGACATC
GCTGACTGTAGATGGAATTTTTTATGTCATTGACACAGGTTATGGTAAAA
TGAAAGTTTACAACCCTAAGATGGGTATGGATGCTCTTCAAGTGTTCCCT
GTCAGCCGTGCTGCTGCTGATCAGCGAGCCGGACGTGCTGGTAGAACTGG
GCCTGGTACGTGTTATAGACTATATACGGAGAGTGCATACCTGAATGAAA
TGCTGCCCAGTCCTGTGCCGGAGATCCAGAGGACCAACCTTGGCAATGTG
GTGTTGTTGCTTAAGTCTCTTAAAATTGATAACCTGCTGGATTTTGATTT
CATGGACCCACCACCACAAGAAAACATCTTGAATTCTATGTACCAGTTGT
GGGTCTTGGGGGCACTTAACAATGTCGGGGCTTTGACTGACCTTGGCTGG
AAAATGGTGGAGTTCCCGCTGGACCCCCCACTTGCTAAGATGCTTTTGAT
GGGTGAACAGCTAGGATGCCTAGATGAGGTTTTGACAATTGTATCTATGC
TTTCAGTGCCATCAGTATTCTTCCGGCCTAAAGATAGGGCAGAGGAGAGT
GATGCAGCGAGAGAAAATTTTTCGTACAGGAATCTGACCACTTAACTCTG
CTTTATGTTTTACAGCATTGGAAAGAGCACCAGTATCGGGGGAGATTGGT
GTGAGGAACTTTACCTGCATGTTAAATCATAACGAAGGGCCAGAAAAGGT
GAAATCCCAGTTGCTGGATATTCCCAGGACGCTTAAAATCCCGCTAACAT
CCCGTGGGGCATGAATTTCAAAGTTGGTCAAAAAAACCATCTTGTTTGGC
TAACTTCCCAAAGGCCTGCAAAAAATAAAGGGGGGTGGGGGAAAAAAATT
AATTTGGGGGAAAGGGAAAGGCCTTTGTCCTCTCGCCCCCCCAAACAAGG
GGTCTTTTTTTGGGTGGTTGGGGGTTTAAACCCCCCCCGCAAAAAAGAGG
GGGTGTTTTTATATTCTAAAATATTAATATTTTTTTTTATAACACAAAAA
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