DY262933
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.612e-16 Identity = 73/277 (26.35%), Postives = 122/277 (44.04%), Query Frame = 1 Query: 130 ILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGALN----------NVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAARENFS 924 +L+F+ G EI M +L++S + L + P++S + + Q +F G RK I++TNIAE+S+TV + YVID + V + +L++ S CYRL + + N + VPE+ R LG+ + + PP +I ++ L +GAL + G LT LG + + P++ L K++++G GCLDE L I + LS+ + F P + + + NFS Sbjct: 234 VLVFLPGLGEINY--------MHELLTSLVHK--RLQVYPLHSSVALEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSRGYCYRLVHKDFWDNSIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMPFRQHLDGYRNKVNFS 500
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 1.782e-15 Identity = 73/283 (25.80%), Postives = 119/283 (42.05%), Query Frame = 1 Query: 67 DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGALN----------NVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRP 879 D E+ K S +L+F+ G EI M +L+++ + L + P++S + + Q +F G RK I++TNIAE+S+TV + YVID + V + +L++ S CYRL + + + VPE+ R LG+ V + PP +I ++ L +GAL + G LT LG + + P+ L K++++G GCLDE L I + LS+ + F P Sbjct: 213 DMKESGNKTWSGAQFVSERSSVLVFLPGLGEINY--------MHELLTNMIHK--RLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIHRDFWDSAIPDHVVPEMLRCPLGSTVLKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFTMP 485
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 2.328e-15 Identity = 72/283 (25.44%), Postives = 119/283 (42.05%), Query Frame = 1 Query: 67 DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXF--DFMDPPPQENILNSMYQLWVLGAL----------NNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRP 879 D E+ K S +L+F+ G EI M +L+++ + L + P++S + + Q +F G RK I++TNIAE+S+TV + YVID + V + +L++ S CYRL + + + VPE+ R LG+ + + PP +I ++ L +GAL + G LT LG + + P+ L K++++G GCLDE L I + LS+ + F P Sbjct: 212 DMKESGNKTWSGAQFVSERSSVLVFLPGLGEINY--------MHELLTNMIHK--RLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIPRDFWDSAIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPSLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAALSLKNFFTMP 484
BLAST of DY262933 vs. ExPASy Swiss-Prot
Match: YR366_MIMIV (Putative ATP-dependent RNA helicase R366 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R366 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.109e-12 Identity = 50/187 (26.74%), Postives = 91/187 (48.66%), Query Frame = 1 Query: 64 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLI------SSTTREVPELLI-----LPIYSQLPADLQ---AKIFEKAKEGT--RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLNEMLPSPVPEI 576 +++++ +K+ + + ++ GDIL+FMTGQ +I + A+ I S + E EL++ L Y++ D++ ++I + +GT R I+ATN+AE S+T+ + YV+DTGY K+ VY+P G+ P+S Y LY+ + +N + +I Sbjct: 916 KNFIDYGIKKTIELANSTTNGDILLFMTGQADIHKSIKAINAATPPNIVALGYYSELSEETKELIVKIHQTLASYTRYKEDVELDESEITRRVPKGTYTRAIIIATNVAEASITLKNLKYVVDTGYNKVVVYDPIDGVYDTWTLPISFSSAMQRRGRVGRLSSGDFYALYSLNKVINNKTAYKIADI 1102 The following BLAST results are available for this feature:
BLAST of DY262933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262933 ID=DY262933; Name=DY262933; organism=Citrus clementina; type=EST; length=1350bpback to top |