DY262934
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_NITMS (DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain SCM1) GN=pcn PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 4.950e-26 Identity = 75/247 (30.36%), Postives = 126/247 (51.01%), Query Frame = 2 Query: 53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA-TIIEMHEPVSLTFALRYMNSFTRAT-PLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 LK ++ AI LV +A F +A G S + MD SHVAL+ + + FE Y CD +I G+ ++ SK++K A D I + + + + T K ++M+L++ + +P+ Y + + + S++F +I D+ + D + I + FS +GD G I L DK +E I E T++L Y+N +A + +T SS P+ +E+K+A +G I FYLAP++E Sbjct: 13 LKAIISAISTLVEEATFVATAEGISFRGMDPSHVALIDISWPNSAFEKYECDSDIKFGVRIDEFSKLIKRADKKDSIEISISEQNMLLV------TVGKNKKYKMRLIESSATDTPLPKIPYDSKIILSSSKFDKILGDVQVVSDYLTIHTSDSKGDFSGKGDSGEVVIDL------DKDDEGIEEISSKEDSVGTYSLEYLNPVVKAVGTTAGFITCEFSSAKPLRIEFKVANIGRIHFYLAPRVE 247
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM7 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcn PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.299e-23 Identity = 69/244 (28.28%), Postives = 119/244 (48.77%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + + ++ ++GD+ + V N+ D M E TF L Y+ T++T + + I L S++PV +EY+++ + F LAP+IE Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDTEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDEDKFIIYSKGDLNQSETVF-DNSIEDDDNALAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM6 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcn PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.299e-23 Identity = 72/246 (29.27%), Postives = 124/246 (50.41%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE--MHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KKV+ A LV++ F+ G AMD SHVALV++ + E FE Y D + +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + V ++ ++GD+ + V + ++AT+ E M E TF L Y+ T++T + + I L S++PV +EY+++ + F LAP+IE Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKEVFEEYEGDIH-DIGIDLEALKKIIARGKGDEKLILDLDVEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVFDNGI---EDDDATLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM5 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcn PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.003e-23 Identity = 70/244 (28.69%), Postives = 120/244 (49.18%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D + +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + V ++ ++GD+ + V N D + M E TF L Y+ T++T + + I L S++PV +EY+++ + F LAP+IE Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDVH-DIGIDLEALKKIIARGKGDEKLILDLDAEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVF-DNGVDDDDDTLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METMP (DNA polymerase sliding clamp OS=Methanococcus maripaludis GN=pcn PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.122e-23 Identity = 69/244 (28.28%), Postives = 118/244 (48.36%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + + + ++GD+ + V N+ D M E TF L Y+ T++T + + I L S++PV +EY+++ + F LAP+IE Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDVEKNKLNITFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDENKFVIYSKGDLNQSETVF-DNSIDDDDNALADFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METTH (DNA polymerase sliding clamp OS=Methanobacterium thermoautotrophicum GN=pcn PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 7.396e-22 Identity = 70/260 (26.92%), Postives = 122/260 (46.92%), Query Frame = 2 Query: 20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIA-EMGYIRFYLAPKIEEDE 796 M + L ++L+ +AI +V++ SA G L A+D SH+ V L L++E F+ Y CD + ++ + K+LK A +D + L D+G+ + F E+ + F+++L+DI+ E PE EY +P D+ D + V ++ S G+ G A I +DKP + ++L + +A S T I+L ++P+ + K+A + G + F LAP+IE +E Sbjct: 1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEGNLIIQFEGEA-----VRTFKIRLIDIEYETPSPPEIEYENEFEVPFQLLKDSIADIDIFSDKITFRVDEDRFIASAEGEFGDAQIEYLHGERIDKPARS-----------IYSLDKIKEMLKADKFSETAIINLGDDMPLKLTLKMASKEGELSFLLAPRIEAEE 244
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METJA (DNA polymerase sliding clamp OS=Methanocaldococcus jannaschii GN=pcn PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 7.396e-22 Identity = 68/246 (27.64%), Postives = 121/246 (49.19%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATII--EMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KKV++ I L+++ F+ G AMD SHVALV+L + FE Y D + +G++L K++ A D + L+ D+ + + +FE+ + K F + L+DI + + +PE EY ++ + F KD D V++ ++ +GD L +N + + + + II E+ E F L Y+ + + + I L +++P+ +EY IA + + F LAP+IE Sbjct: 13 KKVVDTISTLLDEICFEVDEEGIKASAMDPSHVALVSLEIPRLAFEEYEADSH-DIGIDLEAFKKVMNRAKAKDRLILELDEEKNKLNVIFENTGKRK---FSLALLDISASSVKVPEIEYPNVIMIKGDAFKEALKDADLFSDYVILKADEDKFVIHAKGD-------LNENEAIFEKDSSAIISLEVKEEAKSAFNLDYLMDMVKGVSSGDIIKIYLGNDMPLKLEYSIAGVN-LTFLLAPRIE 246
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_META3 (DNA polymerase sliding clamp OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pcn PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.262e-21 Identity = 70/247 (28.34%), Postives = 130/247 (52.63%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKF--STRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 KK++++I LV++ F+ G AMD SHVAL+++ + E F+ Y D + +G++L + K++ A ++ + L+ D + + + ++ K F + L D+ S ++ +PE Y V + + KD + D V + +T++G KF ++GDI T T +D+ E+ I +++ E T+ L Y+ T+AT + + I L +++PV +EY I + I + LAP+IE Sbjct: 12 KKIIDSISNLVDEICFEVDELGIKANAMDPSHVALISVNIPKESFDEYVSDTH-DIGVDLEALKKIMNRAKPNEKLMLELDMEKNKLDIILKNEGTRK---FSISLYDVSSSNVKVPEIGYPNEVMIKAGTIVESLKDAELVNDHVSLKITEDG-KFIIYSKGDINT------NETVLDRDNESIIELKISESSKSTYNLAYLKDITKATSSEDILHIHLGTDMPVKIEYIIGDTKLI-YLLAPRIE 246
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METST (DNA polymerase sliding clamp OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pcn PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.395e-20 Identity = 63/260 (24.23%), Postives = 125/260 (48.08%), Query Frame = 2 Query: 20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIA-EMGYIRFYLAPKIEEDE 796 M +L L S+ K +AI +V++ + + G L A+D SH+ V L L+ F+ Y CD+ I + ++ + K+LK + NDD++ L D G+ +T FE + F++KL+D++ + P+ Y + +P + +D+ + D V V ++ + GD A I +++ A +A+ + +A S+ +S+ +++P+ + ++ E G + F LAP++EE++ Sbjct: 1 MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIYECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILT--FEGAVK---KTFKVKLIDLEYDTPSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKIEYLHGEKINEKARA-----------VYAISNIKEMLKAEKFSDNTYLSIGTDMPLTLYLELLNEEGLLSFLLAPRLEEED 244
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRAE (DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum GN=pcnA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.822e-20 Identity = 63/243 (25.93%), Postives = 120/243 (49.38%), Query Frame = 2 Query: 62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFT-RATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 ++++I LV +ANF G L+A+D S A+V L + E FE + + G+N + K+L+ D I+++ ++G + + +S + + +++ E L P+ Y A+V+ S A KD ++ D V ++E + S D G + L +N+ E ++ EP S F+L Y+ T + + +S+ VTI L++ P+ + + I G I +++AP++E Sbjct: 17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKELKKLLRRVKKGDKISMEFEEGRVRIKLIGKS-----VRSIVVPSIEVVGEELPTPKVVYTAMVKAASDVLATAVKDADAVADEVKFEASEEALIISASSDKGEVEVKLDKNS-----ELVYEFDVKEPASARFSLEYLVDITSKTSKISDIVTIELATAKPIYLSFDIPAGGKISYFIAPRVE 249 The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bpback to top |