DY262934

Overview
NameDY262934
Unique NameDY262934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_NITMS (DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain SCM1) GN=pcn PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.950e-26
Identity = 75/247 (30.36%), Postives = 126/247 (51.01%), Query Frame = 2
Query:   53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA-TIIEMHEPVSLTFALRYMNSFTRAT-PLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            LK ++ AI  LV +A F  +A G S + MD SHVAL+ +   +  FE Y CD +I  G+ ++  SK++K A   D I +   + +  +       T  K   ++M+L++  +    +P+  Y + + + S++F +I  D+  + D + I  +     FS +GD G   I L      DK +E    I   E    T++L Y+N   +A    +  +T   SS  P+ +E+K+A +G I FYLAP++E
Sbjct:   13 LKAIISAISTLVEEATFVATAEGISFRGMDPSHVALIDISWPNSAFEKYECDSDIKFGVRIDEFSKLIKRADKKDSIEISISEQNMLLV------TVGKNKKYKMRLIESSATDTPLPKIPYDSKIILSSSKFDKILGDVQVVSDYLTIHTSDSKGDFSGKGDSGEVVIDL------DKDDEGIEEISSKEDSVGTYSLEYLNPVVKAVGTTAGFITCEFSSAKPLRIEFKVANIGRIHFYLAPRVE 247          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM7 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcn PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.299e-23
Identity = 69/244 (28.28%), Postives = 119/244 (48.77%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + ++     ++GD+  +  V   N+  D         M E    TF L Y+   T++T   + + I L S++PV +EY+++    + F LAP+IE
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDTEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDEDKFIIYSKGDLNQSETVF-DNSIEDDDNALAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM6 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcn PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.299e-23
Identity = 72/246 (29.27%), Postives = 124/246 (50.41%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE--MHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  E FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V        + ++AT+ E  M E    TF L Y+   T++T   + + I L S++PV +EY+++    + F LAP+IE
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKEVFEEYEGDIH-DIGIDLEALKKIIARGKGDEKLILDLDVEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVFDNGI---EDDDATLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METM5 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcn PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.003e-23
Identity = 70/244 (28.69%), Postives = 120/244 (49.18%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V   N   D  +      M E    TF L Y+   T++T   + + I L S++PV +EY+++    + F LAP+IE
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDVH-DIGIDLEALKKIIARGKGDEKLILDLDAEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVF-DNGVDDDDDTLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METMP (DNA polymerase sliding clamp OS=Methanococcus maripaludis GN=pcn PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.122e-23
Identity = 69/244 (28.28%), Postives = 118/244 (48.36%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + +      ++GD+  +  V   N+  D         M E    TF L Y+   T++T   + + I L S++PV +EY+++    + F LAP+IE
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDVEKNKLNITFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDENKFVIYSKGDLNQSETVF-DNSIDDDDNALADFNMGEASRSTFNLAYLKDLTKSTAAEDLLKIYLGSDMPVKIEYEVSGSKLV-FLLAPRIE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METTH (DNA polymerase sliding clamp OS=Methanobacterium thermoautotrophicum GN=pcn PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.396e-22
Identity = 70/260 (26.92%), Postives = 122/260 (46.92%), Query Frame = 2
Query:   20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIA-EMGYIRFYLAPKIEEDE 796
            M +  L   ++L+   +AI  +V++     SA G  L A+D SH+  V L L++E F+ Y CD    + ++   + K+LK A  +D + L  D+G+  + F  E+     +  F+++L+DI+ E    PE EY     +P         D+    D +   V ++    S  G+ G A I       +DKP  +            ++L  +    +A   S T  I+L  ++P+ +  K+A + G + F LAP+IE +E
Sbjct:    1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEGNLIIQFEGEA-----VRTFKIRLIDIEYETPSPPEIEYENEFEVPFQLLKDSIADIDIFSDKITFRVDEDRFIASAEGEFGDAQIEYLHGERIDKPARS-----------IYSLDKIKEMLKADKFSETAIINLGDDMPLKLTLKMASKEGELSFLLAPRIEAEE 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METJA (DNA polymerase sliding clamp OS=Methanocaldococcus jannaschii GN=pcn PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.396e-22
Identity = 68/246 (27.64%), Postives = 121/246 (49.19%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATII--EMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KKV++ I  L+++  F+    G    AMD SHVALV+L +    FE Y  D +  +G++L    K++  A   D + L+ D+  + +  +FE+  + K   F + L+DI +  + +PE EY  ++ +    F    KD     D V++   ++      +GD       L +N  + + + + II  E+ E     F L Y+    +     + + I L +++P+ +EY IA +  + F LAP+IE
Sbjct:   13 KKVVDTISTLLDEICFEVDEEGIKASAMDPSHVALVSLEIPRLAFEEYEADSH-DIGIDLEAFKKVMNRAKAKDRLILELDEEKNKLNVIFENTGKRK---FSLALLDISASSVKVPEIEYPNVIMIKGDAFKEALKDADLFSDYVILKADEDKFVIHAKGD-------LNENEAIFEKDSSAIISLEVKEEAKSAFNLDYLMDMVKGVSSGDIIKIYLGNDMPLKLEYSIAGVN-LTFLLAPRIE 246          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_META3 (DNA polymerase sliding clamp OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pcn PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.262e-21
Identity = 70/247 (28.34%), Postives = 130/247 (52.63%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKF--STRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            KK++++I  LV++  F+    G    AMD SHVAL+++ +  E F+ Y  D +  +G++L  + K++  A  ++ + L+ D   + +  + ++    K   F + L D+ S ++ +PE  Y   V + +       KD   + D V + +T++G KF   ++GDI T        T +D+  E+ I +++ E    T+ L Y+   T+AT   + + I L +++PV +EY I +   I + LAP+IE
Sbjct:   12 KKIIDSISNLVDEICFEVDELGIKANAMDPSHVALISVNIPKESFDEYVSDTH-DIGVDLEALKKIMNRAKPNEKLMLELDMEKNKLDIILKNEGTRK---FSISLYDVSSSNVKVPEIGYPNEVMIKAGTIVESLKDAELVNDHVSLKITEDG-KFIIYSKGDINT------NETVLDRDNESIIELKISESSKSTYNLAYLKDITKATSSEDILHIHLGTDMPVKIEYIIGDTKLI-YLLAPRIE 246          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METST (DNA polymerase sliding clamp OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pcn PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.395e-20
Identity = 63/260 (24.23%), Postives = 125/260 (48.08%), Query Frame = 2
Query:   20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIA-EMGYIRFYLAPKIEEDE 796
            M +L L   S+ K   +AI  +V++   +  + G  L A+D SH+  V L L+   F+ Y CD+ I + ++   + K+LK + NDD++ L  D G+  +T  FE   +     F++KL+D++ +    P+  Y   + +P +      +D+  + D V   V ++ +     GD   A I       +++   A            +A+  +    +A   S+   +S+ +++P+ +  ++  E G + F LAP++EE++
Sbjct:    1 MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIYECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILT--FEGAVK---KTFKVKLIDLEYDTPSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKIEYLHGEKINEKARA-----------VYAISNIKEMLKAEKFSDNTYLSIGTDMPLTLYLELLNEEGLLSFLLAPRLEEED 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRAE (DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum GN=pcnA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.822e-20
Identity = 63/243 (25.93%), Postives = 120/243 (49.38%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFT-RATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            ++++I  LV +ANF     G  L+A+D S  A+V L +  E FE +     +  G+N   + K+L+     D I+++ ++G   +  + +S     +    +  +++  E L  P+  Y A+V+  S   A   KD  ++ D V    ++E +  S   D G   + L +N+     E     ++ EP S  F+L Y+   T + + +S+ VTI L++  P+ + + I   G I +++AP++E
Sbjct:   17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKELKKLLRRVKKGDKISMEFEEGRVRIKLIGKS-----VRSIVVPSIEVVGEELPTPKVVYTAMVKAASDVLATAVKDADAVADEVKFEASEEALIISASSDKGEVEVKLDKNS-----ELVYEFDVKEPASARFSLEYLVDITSKTSKISDIVTIELATAKPIYLSFDIPAGGKISYFIAPRVE 249          
The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PCNA_NITMS4.950e-2630.36DNA polymerase sliding clamp OS=Nitrosopumilus mar... [more]
PCNA_METM72.299e-2328.28DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM62.299e-2329.27DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM53.003e-2328.69DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METMP5.122e-2328.28DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METTH7.396e-2226.92DNA polymerase sliding clamp OS=Methanobacterium t... [more]
PCNA_METJA7.396e-2227.64DNA polymerase sliding clamp OS=Methanocaldococcus... [more]
PCNA_META31.262e-2128.34DNA polymerase sliding clamp OS=Methanococcus aeol... [more]
PCNA_METST1.395e-2024.23DNA polymerase sliding clamp OS=Methanosphaera sta... [more]
PCNA1_PYRAE1.822e-2025.93DNA polymerase sliding clamp A OS=Pyrobaculum aero... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bp
CAAGAAACTCGCAGCGAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCC
TTCTCAAGAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAAC
TTTGACTGCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCA
CGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACC
GCTGTGACCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAG
ATGCTTAAGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGA
CGGCAGCGATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGA
TTGCTGATTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGT
ATACCGGAGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTT
TGCTAGAATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTTGTGATTT
CTGTCACAAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACT
GCTAATATTGTGCTCAGACAAAATACTACAGTAGACAAGCCAGAAGAAGC
AACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGAT
ACATGAATTCATTCACAAGGGCTACTCCATTGTCGAATACTGTTACTATC
AGCCTATCCTCAGAATTGCCCGTTGTGGTCGAATACAAGATTGCTGAGAT
GGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAGGATG
AGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGCATTT
TGTTGAATCAAGTTACTCCTATATTTTAAGTTCGCTTTTAGAATGTTTCT
CGTAAATCTTCATGTTGGAAAACCAAGCGTTTGTAGTTCGGTAGATTGNT
AAAAATTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACATGTA
ATCATTCCCTTTGTCCCTGGTGCTTTGAAGAGTAGGCTTTAATGGACTTG
AAACTTTCCAAATTTATCAAAAATGAAACCATTTCTGAATGTTTGGGCCA
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