DY262934

Overview
NameDY262934
Unique NameDY262934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METS3 (DNA polymerase sliding clamp OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=pcn PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.908e-18
Identity = 61/260 (23.46%), Postives = 118/260 (45.38%), Query Frame = 2
Query:   20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK-IAEMGYIRFYLAPKIEEDE 796
            M +  L   S+LK   +AI  +V++      + G  L A+D SH+  V L L++  F+ Y CD    + ++      +LK A + D + +  D+G+  +TF       D    F+++L+DI+ ++   PE E+ A  ++          D+    D + + V ++  + S  G+ G A++       ++  E++            F+L  +    +A   S    I L +++P+ +    +   G + F LAP++E DE
Sbjct:    1 MFKAELSDSSILKTSFDAISSIVDEVQIQTDSEGMRLDALDRSHITFVHLELKASLFDEYVCDVPEKINIDTGEFMSVLKRAKSQDRVIMSLDEGNFIITF-----EGDATRTFKIRLIDIEYDNPTPPELEHPASFKVHFGILKDAINDIDIFSDKIALQVDEDYFRASADGEFGDASVKYLHGENINTQEKS-----------LFSLDKIREMLKADKFSEEAEIGLGTDMPLKLTLNMVTGDGKLSFLLAPRLESDE 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEPD (DNA polymerase sliding clamp OS=Thermofilum pendens (strain Hrk 5) GN=pcn PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.105e-17
Identity = 58/247 (23.48%), Postives = 123/247 (49.80%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIG--TANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSF-TRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            K ++E++  +V++ANF  S  G  L+A+D   +A+V L + S  FE Y  D+   +   L+++ K+LK A +DD I+ +   G   +T    +  +     F+  L+DI  + L  P+  +    +M S  F    KD + + ++V +    E +    R D G   +   +   + V+       I++ E    ++ + +++   ++A  +S+ + +  ++ +P+ + + IA  G +++ LAP++E
Sbjct:   13 KYIIESLATIVDEANFVASPEGLKLRALDPGRIAMVDLFIPSNLFEEYSVDQETKISAVLDDIDKVLKRAKSDDKISFEVSQGRLIITLSGRAERR-----FKFPLIDIAGQELPSPKLNFTVAAKMLSDTFRDALKDASLVSESVKLKAEDESLWLLARSDKGEIESRFSIETGSLVE-------IDVKEAAEASYGIDFLDKIVSKAYRISDILGLRFATNMPLEMTFDIAGGGTLKYLLAPRME 247          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEFM (DNA polymerase sliding clamp OS=Thermococcus fumicolans GN=pcn PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.105e-17
Identity = 66/244 (27.05%), Postives = 118/244 (48.36%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA-GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            ++     L+++A F  +  G S++AMD S V L+ L L    F  Y  +   ++G+N+++  K+LK   G D +I  K D+    +TF   +        F + L+D++   L +PE  + A V +         KD + + D +   + KE  +FS R + G  N V  + T  D  E    IE+ E     + + Y+    +    ++ VTI   +E+P+ ++Y I + G + F LAP++E+
Sbjct:   16 LIATASNLIDEAAFKVTDEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEEETIGINMDHFKKILKRGKGKDTLILKKGDENFLEITFEGTAK-----RTFRLPLIDVEELELDLPELPFTAKVVLLGEVLKEAVKDASLVSDAMKF-IAKEN-EFSMRAE-GETNEVEIKLTLED--EGLLDIEVEEETKSAYGISYLADMVKGIGKADEVTIRFGNEMPLQMDYFIRDEGKLTFLLAPRVED 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRAB (DNA polymerase sliding clamp OS=Pyrococcus abyssi GN=pcn PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.885e-17
Identity = 60/244 (24.59%), Postives = 122/244 (50.00%), Query Frame = 2
Query:   59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            +++E    L+++A F  +  G S++AMD S V L+ L L +  F  Y  D   ++G+N++++ K+LK     + + L+  + +    F+  S        F++ L+D++   + +PE  + A V +         KD + + D++   + KE  +F+ R +  T  + ++      + E    IE+ E     + + Y++   +    ++ VTI   +E+P+ +EY I + G + F LAP++EE
Sbjct:   15 QLIETASRLIDEAAFKVTEEGISMRAMDPSRVVLIDLNLPASIFSKYEVDGEETIGVNMDHLKKVLKRGKAKETLILRKGEEN----FLEISLQGTATRTFKLPLIDVEEIEVDLPELPFTAKVVILGDVIKEAVKDASLVSDSMKF-IAKEN-EFTMRAEGETQEVEVKLTL---EDEGLLDIEVQEETKSAYGISYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLIFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRHO (DNA polymerase sliding clamp OS=Pyrococcus horikoshii GN=pcn PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.216e-17
Identity = 61/244 (25.00%), Postives = 119/244 (48.77%), Query Frame = 2
Query:   59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            +++E    L+++A F  +  G S++AMD S V L+ L L S  F  Y  D   ++G+N++++ K+LK     D + L+  + +    F+  S        F + L+D++   + +P+  Y A V +         KD + + D++   + KE  +F  R +  T  + ++      + E    IE+ E     + + Y+    +    ++ VT+   +E+P+ +EY I + G + F LAP++EE
Sbjct:   15 QLIETASRLIDEAAFKVTEEGISMRAMDPSRVVLIDLNLPSSIFSKYEVDGEETIGVNMDHLKKVLKRGKAKDTLILRKGEEN----FLEISLQGTATRTFRLPLIDVEEIEVELPDLPYTAKVVVLGEVLKEAVKDASLVSDSIKF-MAKEN-EFIMRAEGETQEVEVKLTL---EDEGLLDIEVQEETKSAYGVSYLADMVKGIGKADEVTMRFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METTP (DNA polymerase sliding clamp OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=pcn PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.356e-17
Identity = 60/256 (23.44%), Postives = 124/256 (48.44%), Query Frame = 2
Query:   35 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVD-KPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 793
            ++    L+  +EA+  LV++  F  +  G  L+A+D ++VA+V+L + +  FE Y+      +G++L  +S +L  A   + + L+  +    +     S        + + L+D  +  +   IPE +  A V +P AEF R  K    + D VV+ V  +      +GDI    + +R +  +D KP EA  +         F+L Y++  +++   +  V + +  + P+ + + + +  ++ + LAP+IE++
Sbjct:    5 VIDAETLRDAIEAVSSLVDEVKFTITEKGLELKAVDPANVAMVSLKIDASAFEFYQATPG-EIGVDLVRLSDLLSMADRGERVRLELLEDERKLRIGVGS------LSYTLSLIDPSAIRKEPRIPELDLPAHVAIPGAEFRRAIKAAEKVSDHVVLGVKDDIFYMEAKGDIDALKLTMRSSELLDMKPGEARSL---------FSLDYLSDMSKSIGKAPEVKLEIGIDYPLRISFMLKDNVHVSYLLAPRIEQE 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRKO (DNA polymerase sliding clamp 1 OS=Pyrococcus kodakaraensis GN=pcn1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.222e-16
Identity = 60/244 (24.59%), Postives = 116/244 (47.54%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA-GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            ++     L+++A F  +  G S++AMD S V L+ L L    F  Y  +   ++G+N++   K+LK     D +I  K D+    +TF   +        F + L+D++   L +PE  + A V +         KD + + D +   + KE  +F+ + +  T  + +R      + E    +E+ E     + +RY++   +    ++ V +   +E+P+ +EY I + G + F LAP++EE
Sbjct:   16 LIATASNLIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILKRGKAKDTLILRKGDENFLEITFEGTAK-----RTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKF-IAKEN-EFTMKAEGETNEVEIRLTL---EDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRFU (DNA polymerase sliding clamp OS=Pyrococcus furiosus GN=pcn PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.596e-16
Identity = 58/244 (23.77%), Postives = 114/244 (46.72%), Query Frame = 2
Query:   59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            ++++   +L+++A F  +  G S++AMD S V L+ L L S  F  Y      ++G+N++++ K+LK     D + LK  + +    F+  +        F + L+D++   + +PE  + A V +         KD + + D++     +        G+     I L       + E    IE+ E     + + Y++   +    ++ VTI   +E+P+ +EY I + G + F LAP++EE
Sbjct:   15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNMDHLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTL-----EDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEGJ (DNA polymerase sliding clamp OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pcn PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.084e-16
Identity = 56/243 (23.05%), Postives = 112/243 (46.09%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            ++     L+++A F  +  G S++AMD S V L+ L L    F  Y  +   ++G+N+++  K+LK   + D + L+  D  + +   FE   +     F + L+D++   L +PE  + A V +         KD + + D++     ++       G+     I L       + E    +E+ E     + + Y+    +    ++ VT+   +E+P+ ++Y I + G + F LAP++EE
Sbjct:   16 LIATASNLIDEAAFKITEEGVSMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDHFKKILKRGKSKDTLILRKGD-ENFLEITFEGTAK---RTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEAIKDASLVSDSLKFIAKEDEFTMKAEGETNEVEIKLTL-----EDEGLLDLEVEEETRSAYGISYLADMVKGIGKADEVTLRFGTEMPLQMDYFIRDEGKLTFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA3_SULSO (DNA polymerase sliding clamp C OS=Sulfolobus solfataricus GN=pcnC PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.084e-16
Identity = 57/257 (22.18%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   23 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMH-EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            ++ +++       +L  + + +++ANF  +  G  +  +D S V  + + L S  FE +   +   + G  L +V+ +LK    DD + L +++   T+TF  E         FE+ L+ ++S        E+    ++ +  FA I  +L+ +G+ + I   +  + F   GD+ TA + L         +  T++E     VS ++ + Y+ + T+    S+++ +   S++P+ + +K+ + GY  FY+AP+ +
Sbjct:    1 MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVEL-------STDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245          
The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PCNA_METS32.908e-1823.46DNA polymerase sliding clamp OS=Methanobrevibacter... [more]
PCNA_THEPD1.105e-1723.48DNA polymerase sliding clamp OS=Thermofilum penden... [more]
PCNA_THEFM1.105e-1727.05DNA polymerase sliding clamp OS=Thermococcus fumic... [more]
PCNA_PYRAB1.885e-1724.59DNA polymerase sliding clamp OS=Pyrococcus abyssi ... [more]
PCNA_PYRHO3.216e-1725.00DNA polymerase sliding clamp OS=Pyrococcus horikos... [more]
PCNA_METTP9.356e-1723.44DNA polymerase sliding clamp OS=Methanosaeta therm... [more]
PCNA1_PYRKO1.222e-1624.59DNA polymerase sliding clamp 1 OS=Pyrococcus kodak... [more]
PCNA_PYRFU1.596e-1623.77DNA polymerase sliding clamp OS=Pyrococcus furiosu... [more]
PCNA_THEGJ2.084e-1623.05DNA polymerase sliding clamp OS=Thermococcus gamma... [more]
PCNA3_SULSO2.084e-1622.18DNA polymerase sliding clamp C OS=Sulfolobus solfa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10BE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bp
CAAGAAACTCGCAGCGAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCC
TTCTCAAGAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAAC
TTTGACTGCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCA
CGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACC
GCTGTGACCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAG
ATGCTTAAGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGA
CGGCAGCGATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGA
TTGCTGATTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGT
ATACCGGAGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTT
TGCTAGAATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTTGTGATTT
CTGTCACAAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACT
GCTAATATTGTGCTCAGACAAAATACTACAGTAGACAAGCCAGAAGAAGC
AACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGAT
ACATGAATTCATTCACAAGGGCTACTCCATTGTCGAATACTGTTACTATC
AGCCTATCCTCAGAATTGCCCGTTGTGGTCGAATACAAGATTGCTGAGAT
GGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAGGATG
AGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGCATTT
TGTTGAATCAAGTTACTCCTATATTTTAAGTTCGCTTTTAGAATGTTTCT
CGTAAATCTTCATGTTGGAAAACCAAGCGTTTGTAGTTCGGTAGATTGNT
AAAAATTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACATGTA
ATCATTCCCTTTGTCCCTGGTGCTTTGAAGAGTAGGCTTTAATGGACTTG
AAACTTTCCAAATTTATCAAAAATGAAACCATTTCTGAATGTTTGGGCCA
back to top