DY262934
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METS3 (DNA polymerase sliding clamp OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=pcn PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.908e-18 Identity = 61/260 (23.46%), Postives = 118/260 (45.38%), Query Frame = 2 Query: 20 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK-IAEMGYIRFYLAPKIEEDE 796 M + L S+LK +AI +V++ + G L A+D SH+ V L L++ F+ Y CD + ++ +LK A + D + + D+G+ +TF D F+++L+DI+ ++ PE E+ A ++ D+ D + + V ++ + S G+ G A++ ++ E++ F+L + +A S I L +++P+ + + G + F LAP++E DE Sbjct: 1 MFKAELSDSSILKTSFDAISSIVDEVQIQTDSEGMRLDALDRSHITFVHLELKASLFDEYVCDVPEKINIDTGEFMSVLKRAKSQDRVIMSLDEGNFIITF-----EGDATRTFKIRLIDIEYDNPTPPELEHPASFKVHFGILKDAINDIDIFSDKIALQVDEDYFRASADGEFGDASVKYLHGENINTQEKS-----------LFSLDKIREMLKADKFSEEAEIGLGTDMPLKLTLNMVTGDGKLSFLLAPRLESDE 244
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEPD (DNA polymerase sliding clamp OS=Thermofilum pendens (strain Hrk 5) GN=pcn PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.105e-17 Identity = 58/247 (23.48%), Postives = 123/247 (49.80%), Query Frame = 2 Query: 56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIG--TANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSF-TRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 K ++E++ +V++ANF S G L+A+D +A+V L + S FE Y D+ + L+++ K+LK A +DD I+ + G +T + + F+ L+DI + L P+ + +M S F KD + + ++V + E + R D G + + + V+ I++ E ++ + +++ ++A +S+ + + ++ +P+ + + IA G +++ LAP++E Sbjct: 13 KYIIESLATIVDEANFVASPEGLKLRALDPGRIAMVDLFIPSNLFEEYSVDQETKISAVLDDIDKVLKRAKSDDKISFEVSQGRLIITLSGRAERR-----FKFPLIDIAGQELPSPKLNFTVAAKMLSDTFRDALKDASLVSESVKLKAEDESLWLLARSDKGEIESRFSIETGSLVE-------IDVKEAAEASYGIDFLDKIVSKAYRISDILGLRFATNMPLEMTFDIAGGGTLKYLLAPRME 247
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEFM (DNA polymerase sliding clamp OS=Thermococcus fumicolans GN=pcn PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.105e-17 Identity = 66/244 (27.05%), Postives = 118/244 (48.36%), Query Frame = 2 Query: 62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA-GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 ++ L+++A F + G S++AMD S V L+ L L F Y + ++G+N+++ K+LK G D +I K D+ +TF + F + L+D++ L +PE + A V + KD + + D + + KE +FS R + G N V + T D E IE+ E + + Y+ + ++ VTI +E+P+ ++Y I + G + F LAP++E+ Sbjct: 16 LIATASNLIDEAAFKVTDEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEEETIGINMDHFKKILKRGKGKDTLILKKGDENFLEITFEGTAK-----RTFRLPLIDVEELELDLPELPFTAKVVLLGEVLKEAVKDASLVSDAMKF-IAKEN-EFSMRAE-GETNEVEIKLTLED--EGLLDIEVEEETKSAYGISYLADMVKGIGKADEVTIRFGNEMPLQMDYFIRDEGKLTFLLAPRVED 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRAB (DNA polymerase sliding clamp OS=Pyrococcus abyssi GN=pcn PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.885e-17 Identity = 60/244 (24.59%), Postives = 122/244 (50.00%), Query Frame = 2 Query: 59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 +++E L+++A F + G S++AMD S V L+ L L + F Y D ++G+N++++ K+LK + + L+ + + F+ S F++ L+D++ + +PE + A V + KD + + D++ + KE +F+ R + T + ++ + E IE+ E + + Y++ + ++ VTI +E+P+ +EY I + G + F LAP++EE Sbjct: 15 QLIETASRLIDEAAFKVTEEGISMRAMDPSRVVLIDLNLPASIFSKYEVDGEETIGVNMDHLKKVLKRGKAKETLILRKGEEN----FLEISLQGTATRTFKLPLIDVEEIEVDLPELPFTAKVVILGDVIKEAVKDASLVSDSMKF-IAKEN-EFTMRAEGETQEVEVKLTL---EDEGLLDIEVQEETKSAYGISYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLIFLLAPRVEE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRHO (DNA polymerase sliding clamp OS=Pyrococcus horikoshii GN=pcn PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.216e-17 Identity = 61/244 (25.00%), Postives = 119/244 (48.77%), Query Frame = 2 Query: 59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 +++E L+++A F + G S++AMD S V L+ L L S F Y D ++G+N++++ K+LK D + L+ + + F+ S F + L+D++ + +P+ Y A V + KD + + D++ + KE +F R + T + ++ + E IE+ E + + Y+ + ++ VT+ +E+P+ +EY I + G + F LAP++EE Sbjct: 15 QLIETASRLIDEAAFKVTEEGISMRAMDPSRVVLIDLNLPSSIFSKYEVDGEETIGVNMDHLKKVLKRGKAKDTLILRKGEEN----FLEISLQGTATRTFRLPLIDVEEIEVELPDLPYTAKVVVLGEVLKEAVKDASLVSDSIKF-MAKEN-EFIMRAEGETQEVEVKLTL---EDEGLLDIEVQEETKSAYGVSYLADMVKGIGKADEVTMRFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METTP (DNA polymerase sliding clamp OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=pcn PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 9.356e-17 Identity = 60/256 (23.44%), Postives = 124/256 (48.44%), Query Frame = 2 Query: 35 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVD-KPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 793 ++ L+ +EA+ LV++ F + G L+A+D ++VA+V+L + + FE Y+ +G++L +S +L A + + L+ + + S + + L+D + + IPE + A V +P AEF R K + D VV+ V + +GDI + +R + +D KP EA + F+L Y++ +++ + V + + + P+ + + + + ++ + LAP+IE++ Sbjct: 5 VIDAETLRDAIEAVSSLVDEVKFTITEKGLELKAVDPANVAMVSLKIDASAFEFYQATPG-EIGVDLVRLSDLLSMADRGERVRLELLEDERKLRIGVGS------LSYTLSLIDPSAIRKEPRIPELDLPAHVAIPGAEFRRAIKAAEKVSDHVVLGVKDDIFYMEAKGDIDALKLTMRSSELLDMKPGEARSL---------FSLDYLSDMSKSIGKAPEVKLEIGIDYPLRISFMLKDNVHVSYLLAPRIEQE 244
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRKO (DNA polymerase sliding clamp 1 OS=Pyrococcus kodakaraensis GN=pcn1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.222e-16 Identity = 60/244 (24.59%), Postives = 116/244 (47.54%), Query Frame = 2 Query: 62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA-GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 ++ L+++A F + G S++AMD S V L+ L L F Y + ++G+N++ K+LK D +I K D+ +TF + F + L+D++ L +PE + A V + KD + + D + + KE +F+ + + T + +R + E +E+ E + +RY++ + ++ V + +E+P+ +EY I + G + F LAP++EE Sbjct: 16 LIATASNLIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILKRGKAKDTLILRKGDENFLEITFEGTAK-----RTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKF-IAKEN-EFTMKAEGETNEVEIRLTL---EDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVEE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_PYRFU (DNA polymerase sliding clamp OS=Pyrococcus furiosus GN=pcn PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.596e-16 Identity = 58/244 (23.77%), Postives = 114/244 (46.72%), Query Frame = 2 Query: 59 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 ++++ +L+++A F + G S++AMD S V L+ L L S F Y ++G+N++++ K+LK D + LK + + F+ + F + L+D++ + +PE + A V + KD + + D++ + G+ I L + E IE+ E + + Y++ + ++ VTI +E+P+ +EY I + G + F LAP++EE Sbjct: 15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNMDHLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTL-----EDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEGJ (DNA polymerase sliding clamp OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pcn PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.084e-16 Identity = 56/243 (23.05%), Postives = 112/243 (46.09%), Query Frame = 2 Query: 62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790 ++ L+++A F + G S++AMD S V L+ L L F Y + ++G+N+++ K+LK + D + L+ D + + FE + F + L+D++ L +PE + A V + KD + + D++ ++ G+ I L + E +E+ E + + Y+ + ++ VT+ +E+P+ ++Y I + G + F LAP++EE Sbjct: 16 LIATASNLIDEAAFKITEEGVSMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDHFKKILKRGKSKDTLILRKGD-ENFLEITFEGTAK---RTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEAIKDASLVSDSLKFIAKEDEFTMKAEGETNEVEIKLTL-----EDEGLLDLEVEEETRSAYGISYLADMVKGIGKADEVTLRFGTEMPLQMDYFIRDEGKLTFLLAPRVEE 249
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA3_SULSO (DNA polymerase sliding clamp C OS=Sulfolobus solfataricus GN=pcnC PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 2.084e-16 Identity = 57/257 (22.18%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 23 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMH-EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787 ++ +++ +L + + +++ANF + G + +D S V + + L S FE + + + G L +V+ +LK DD + L +++ T+TF E FE+ L+ ++S E+ ++ + FA I +L+ +G+ + I + + F GD+ TA + L + T++E VS ++ + Y+ + T+ S+++ + S++P+ + +K+ + GY FY+AP+ + Sbjct: 1 MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVEL-------STDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245 The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bpback to top |