DY262934

Overview
NameDY262934
Unique NameDY262934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_MIMIV (Probable DNA polymerase sliding clamp OS=Acanthamoeba polyphaga mimivirus GN=PCNA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.722e-16
Identity = 70/294 (23.81%), Postives = 134/294 (45.58%), Query Frame = 2
Query:   17 KMLELRLVQGSLLKKVLEAIKELVND-------ANFDCSATG-----FSLQAMDSSHV------------------------ALVALLLRSEGFEHYRCDR-NISMGMNLNNVSKMLKCAGNDD--IITLKAD-DGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAP 778
            K+LE+R  Q   LK+V E +  +++D       A+ D +  G     +  ++  SSH                          LV ++L +  FE++RCD   I++G++++ +   LK   +DD  +I +K D  GS  +  + E+    +  + E+ LMDI +  + +P+ E+   + M S +F  ICK L+     V I+     + F  + + G   +  +      K +   +I+        + LR +  F++   L NT+ I L ++ P+V+   +A +G +  +L+P
Sbjct:  172 KVLEIRTTQTGALKQVFERVSGVISDCCLTFMPADKDINNAGDDNEYYEDESTKSSHKQSKTTDRPKNTGGIRIIRLTEDNNTLVKVVLEAANFEYFRCDEPKITVGVDMHTLHSHLKMINDDDPIVIYMKKDIQGSLYIRSLSENNDNSEEREIELFLMDIINPEIPVPKTEFQNRITMKSDKFHLICKHLSQNSTFVEITSINNEILFKGQSEGGKVTMTYKDTGYKKKEKPDQVIQG------VYELRNLLGFSKCNKLCNTIEIYLKNDFPLVLVISVATLGKMYVFLSP 459          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_SULOH (DNA polymerase sliding clamp A OS=Sulfurisphaera ohwakuensis GN=pcnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.722e-16
Identity = 59/244 (24.18%), Postives = 118/244 (48.36%), Query Frame = 2
Query:   53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKI 784
            LK +++A+ +LV++A FD    G  L A+D +H++L+ + L  E F+ Y        G N   +SK+LK A   + I ++AD  S  V  +  S   +++  F +  +++    +     E+     + ++ F     ++A + DT++IS  +E V     G+     +   ++T          IE ++  S  + + Y+N     T LS+ V ++ + + P+ +E+ +   G + + LAPK+
Sbjct:   11 LKAIVQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIEAD--SPEVVKLTLSGALNRV--FNVNNIEVLPPEVPEVNLEFDIKATINASGFKNAIGEIAEVADTLLISANEEKVIVKGEGE-NKVEVEFSKDT-----GSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFAEQKPMQLEFNMEGGGKVTYLLAPKL 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_HALWD (DNA polymerase sliding clamp OS=Haloquadratum walsbyi (strain DSM 16790) GN=pcn PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.555e-16
Identity = 66/256 (25.78%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   35 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE-MGYIRFYLAPKIEED 793
            +V  S L+  L+++  LV++     +    +++A+D ++V +V L L +  FE Y  D  + +G+NL+ +   +  A  D ++ L+ D+ +  +    +  +        + L+D DS  +   IP+ +  A + +  A+  R  K    + D V + V  +   +    +  T ++  R +T     ++   +   E  SL F+L Y+    +A P    VTI L  E PV V Y IAE  G I + LAP+I+ D
Sbjct:    5 IVGASTLQDALDSVSVLVDECKIRLNEGELAIRAVDPANVGMVDLALDTAAFESYTADDGV-IGVNLSKLEDFIGMASGDQLVELELDEETRKLNIQMDGLSST------LALIDPDSIRQEPDIPDLDLAAEIMLEGAQLDRGIKAADMVSDHVRLRVASDTEAYHIEAEGDTDDVDFRLDT-----DDLIALTAGEADSL-FSLDYLKDMNKAIPKDAEVTIELGQEFPVKVHYGIAEGYGEITYMLAPRIQSD 247          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_ARCFU (DNA polymerase sliding clamp OS=Archaeoglobus fulgidus GN=pcn PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.065e-16
Identity = 67/260 (25.77%), Postives = 120/260 (46.15%), Query Frame = 2
Query:   35 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLG----IPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMH--EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK-IAEMGYIRFYLAPKIEED 793
            ++ G LLK V  AI  LV++A       G   +A+D ++VA+V + +  + FE Y  D   ++G++++ +  + K     D++ L  +D         ES  + K    E K+  ID   +     IPE E  A + M + EF +       I D V+    KEG +   +GD+         ++ V    E  +IE +  E  S+ F++ Y+  F +     + +TI L +  PV + ++ +     + + LAP+IE +
Sbjct:    5 IMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVED---------ESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDV---------DSIVFHMTETELIEFNGGEARSM-FSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE 245          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THEON (DNA polymerase sliding clamp OS=Thermococcus onnurineus (strain NA1) GN=pcn PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.920e-16
Identity = 56/243 (23.05%), Postives = 109/243 (44.86%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            ++     L+++A F  +  G S++AMD S V L+ L L    F  Y  +   ++G+N+++  K+LK   N D + L+  D  + +   FE   +     F + L++++   L +PE  + A V +         KD + + D +     +        G+     I L       + E    +E+ E     + + Y+    +    ++ V I   +E+P+ +EY I + G + F LAP++E+
Sbjct:   16 LIATASNLIDEAAFKITEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEEETVGINMDHFKKILKRGKNKDTLILRKGD-ENFLEITFEGTAK---RTFRLPLIEVEELELDLPELPFTAKVVVLGEVLKEAVKDASLVSDALKFIARENEFIMKAEGETNEVEIKLTL-----EDEGLLDLEVEEETKSAYGISYLADMIKGIGKADEVIIRFGNEMPLQMEYPIRDEGKLIFLLAPRVED 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_SULTO (DNA polymerase sliding clamp A OS=Sulfolobus tokodaii GN=pcnA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.010e-15
Identity = 58/244 (23.77%), Postives = 116/244 (47.54%), Query Frame = 2
Query:   53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKI 784
            LK +++A+ +LV++A FD    G  L A+D +H++L+ + L  E F+ Y        G N   +SK+LK A   + I + AD  S  V  +  S   +++  F +  +++    +     E+     + ++       ++A + DT++IS  +E V     G+     +   ++T          IE ++  S  + + Y+N     T LS+ V ++ + + P+ +E+ +   G + + LAPK+
Sbjct:   11 LKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDAD--SPEVVKLTLSGALNRV--FNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGE-NKVEVEFSKDT-----GSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKL 244          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_HALLT (DNA polymerase sliding clamp OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pcn PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.494e-14
Identity = 63/256 (24.61%), Postives = 117/256 (45.70%), Query Frame = 2
Query:   35 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE-MGYIRFYLAPKIEED 793
            +V  S L+  L+++  LV++     +    S++A+D ++V +V L L +  FE Y  D  + +G+NL  +  +   A + D+I L+ ++ +  +    +         + + L+D DS  +   IP+ +  + + +  A+  R       + D + + V +    F    +  T ++ LR         E  I     P    F+L Y+    +A P    VTI L  E PV + Y  AE +G++ F LAP+I+ D
Sbjct:    5 IVGASTLQDALDSVSVLVDECKIRLNDEELSIRAVDPANVGMVDLTLEAAAFESYEADGGV-IGVNLARLEDIAGMANSGDLIHLELNEETRKLHIEIDG------LSYTLALIDPDSIRQEPDIPDLDLASEIVVEGAQINRGITAADMVSDHIRLRVDETDEAFFIEAEGDTDDVDLRL------AREDLIALTAGPADSLFSLDYLKDMNKAIPSDAEVTIELGEEFPVKLHYGFAEGLGHVTFMLAPRIQSD 247          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_METKA (DNA polymerase sliding clamp OS=Methanopyrus kandleri GN=pcn PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.413e-14
Identity = 66/263 (25.10%), Postives = 122/263 (46.39%), Query Frame = 2
Query:   20 MLELRLVQ--GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN-ISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI--AEMGYIRFYLAPKIEE 790
            M+E R  Q      K    A  ++V +A    +  G   +AMD+SH+A+  L +  E F+ Y    + +  G+++  V+++++ A   D ITL+ +D  + +  +  S  +    +F ++ +DID +    PE ++   V +         +D   + DTV +        F   G+ G      R    V +  EA +  E+ E V   + L Y+    +A   + +V I L  ++P+ + ++I  A  G + FYLAP++EE
Sbjct:    1 MVEFRAYQEEARYFKYAFNAAGKVVEEAPLIVTENGIVSRAMDASHIAMAVLEMPWEMFDEYEPPSDELMYGLDMEEVTRIVRRARVTDEITLEGEDEEEVIIKLGSSGYE---REFRLRSIDID-DIPDEPELDFAVEVTVVPDFIQDAVRDADLVSDTVKVGAKGNTFYFKAEGERG------RVIPKVQEGAEALLTFEVEEDVETAYPLDYLKDMIQAAQGAESVRIRLGQDMPLELTFRIGPAGEGKLTFYLAPRVEE 253          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_THESM (DNA polymerase sliding clamp OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pcn PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.265e-13
Identity = 51/243 (20.99%), Postives = 108/243 (44.44%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            +++    L+++A F  +  G S++AMD S V L+ L L +  F  Y  D   ++G+N+++  K+LK     DI+ L+  +  + +    E   +     F + L++++   L +PE  +     +         KD + + D++     +        G+     I L       + E    + + E     + + Y+    +    ++ V +   +E+P+ ++Y I + G + F LAP++EE
Sbjct:   16 LIDTASNLIDEAAFKIAEEGMSMRAMDPSRVVLLDLNLPASIFSKYDIDGEETVGVNMDHFKKVLKRGKGKDILVLRKGE-ENFLEITLEGTAK---RTFRLPLIEVEELELDLPELPFTVRAVILGEVLKEAVKDASLVSDSIKFIAKENEFIMKAEGETQEVEIKLTL-----EDEGLLDLNVEEETKSAYGVSYLADMAKGIGKADEVVLRFGNEMPLQMDYPIRDEGRLTFLLAPRVEE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA3_SULTO (DNA polymerase sliding clamp C OS=Sulfolobus tokodaii GN=pcnC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.276e-13
Identity = 50/259 (19.31%), Postives = 114/259 (44.02%), Query Frame = 2
Query:   23 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEA--EYHAIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHE-PVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            + ++++       +   ++E +++   D ++ G  ++ +D S V  + +L+ +  FE Y  ++   +G+ L + + +LK    +D + L+ D+  +         T D + +       I +  +  P    E+    +  +  F  I  ++  IG D++        +  S   D+G++ I L         E   ++E         + L Y+ + ++    S+TV I+  S++P+ + Y + + GY  FY+AP+ E
Sbjct:    1 MRVKVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKV------TLDGVYERTFTFPSIVASEIETPNLNLEFPFKAKALTVTFTDIIDEIEDIGGDSITFKAEGGKLYLSANSDMGSSTIEL-------STENGGLLESEGGDAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRAE 246          
The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PCNA_MIMIV2.722e-1623.81Probable DNA polymerase sliding clamp OS=Acanthamo... [more]
PCNA1_SULOH2.722e-1624.18DNA polymerase sliding clamp A OS=Sulfurisphaera o... [more]
PCNA_HALWD3.555e-1625.78DNA polymerase sliding clamp OS=Haloquadratum wals... [more]
PCNA_ARCFU6.065e-1625.77DNA polymerase sliding clamp OS=Archaeoglobus fulg... [more]
PCNA_THEON7.920e-1623.05DNA polymerase sliding clamp OS=Thermococcus onnur... [more]
PCNA1_SULTO3.010e-1523.77DNA polymerase sliding clamp A OS=Sulfolobus tokod... [more]
PCNA_HALLT1.494e-1424.61DNA polymerase sliding clamp OS=Halorubrum lacuspr... [more]
PCNA_METKA7.413e-1425.10DNA polymerase sliding clamp OS=Methanopyrus kandl... [more]
PCNA_THESM1.265e-1320.99DNA polymerase sliding clamp OS=Thermococcus sibir... [more]
PCNA3_SULTO6.276e-1319.31DNA polymerase sliding clamp C OS=Sulfolobus tokod... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bp
CAAGAAACTCGCAGCGAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCC
TTCTCAAGAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAAC
TTTGACTGCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCA
CGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACC
GCTGTGACCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAG
ATGCTTAAGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGA
CGGCAGCGATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGA
TTGCTGATTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGT
ATACCGGAGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTT
TGCTAGAATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTTGTGATTT
CTGTCACAAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACT
GCTAATATTGTGCTCAGACAAAATACTACAGTAGACAAGCCAGAAGAAGC
AACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGAT
ACATGAATTCATTCACAAGGGCTACTCCATTGTCGAATACTGTTACTATC
AGCCTATCCTCAGAATTGCCCGTTGTGGTCGAATACAAGATTGCTGAGAT
GGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAGGATG
AGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGCATTT
TGTTGAATCAAGTTACTCCTATATTTTAAGTTCGCTTTTAGAATGTTTCT
CGTAAATCTTCATGTTGGAAAACCAAGCGTTTGTAGTTCGGTAGATTGNT
AAAAATTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACATGTA
ATCATTCCCTTTGTCCCTGGTGCTTTGAAGAGTAGGCTTTAATGGACTTG
AAACTTTCCAAATTTATCAAAAATGAAACCATTTCTGAATGTTTGGGCCA
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