DY262934

Overview
NameDY262934
Unique NameDY262934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA3_AERPE (DNA polymerase sliding clamp B2 OS=Aeropyrum pernix GN=pcnB2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.276e-13
Identity = 57/243 (23.46%), Postives = 111/243 (45.68%), Query Frame = 2
Query:   62 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCD-RNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            ++ +I++++ +  F  +  G SL+A+D+SHVA+V L   +  F  Y     ++  G++ + +SK+L+ A  +D + L+ +     V          +I    M       E L  P+  +    RM  + F    +DL    +T+ +   ++ +      ++ T  I L Q+       EA   E  +  S  +++ Y +    A   ++ V +S S + PV V+ +    G + FY++PKIE
Sbjct:   17 MVASIEKIIEEGVFVATGEGLSLRALDTSHVAMVDLYYPNTAFIEYDIGGESVEFGVSFDLLSKVLRRARKEDELVLEVEGSRLAVKLKSRGERTFRIPQVVMTY-----EKLPEPKVSFTVRARMLGSTFREAVRDLEPHSETLTLRALEDALLLVGSSEMATVEIELSQSRGSLLDYEA---ESQDRAS--YSIEYFSEMLSAAQAADAVVVSFSEDAPVRVDMEYLGGGRLTFYVSPKIE 249          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA2_SULAC (DNA polymerase sliding clamp 2 OS=Sulfolobus acidocaldarius GN=pcn2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.070e-12
Identity = 51/257 (19.84%), Postives = 119/257 (46.30%), Query Frame = 2
Query:   23 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-GDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE-MHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 787
            +++++V       + + + + V++A       GF ++ MD S V  + + +  + FE Y  +  + +G++L +V++++K    +DI+ L+ +   D + F  +    + +  F + ++  D         E+     + ++ F  +  +   I GD++        +  S  GD+G + + L         E   ++E         + L ++++ T+    S+T+ I+  S+LP+ + Y + + GY  FY+AP+ E
Sbjct:    1 MKVKVVDALGFSYIFKTLSQYVSEATLLFGNDGFKVKGMDPSKVVYIDIFVPKDYFEEYNLENEMKIGVSLKDVNEVIKNVSKEDILYLELE--KDKIMFTLDG---EYLRTFSLPVLSPDEVETPSINLEFPFRANILTSTFGDLLDEFDQIGGDSIRFKAQNGKLYLSVMGDMGESIVEL-------SLENGGLLESTGTDAESLYGLEHVSNTTKMRRPSDTLEIAFGSQLPLKLRYNLPKGGYADFYIAPRSE 245          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA2_PYRKO (DNA polymerase sliding clamp 2 OS=Pyrococcus kodakaraensis GN=pcn2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.826e-12
Identity = 50/245 (20.41%), Postives = 108/245 (44.08%), Query Frame = 2
Query:   56 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            + ++  +++  ++A F  +  G  ++A+D S V LV L L    F  Y  +   ++  +L    K+LK A + D + L+    +    F+      D+   F++ L+D ++  + IP   +     + +    R  K    + D++    T E + F   G+      VL    T++ P    +          + + Y+    R+   ++ V I    ++P++++Y + + G + F +AP++EE
Sbjct:   14 ESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGEN----FLEVGLLGDENTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVL----TMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRVEE 250          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_NANEQ (DNA polymerase sliding clamp OS=Nanoarchaeum equitans GN=pcn PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.184e-11
Identity = 49/247 (19.84%), Postives = 117/247 (47.37%), Query Frame = 2
Query:   53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRC--DRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEG-VKFSTRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPK 781
            LKK++  + +L+++  F  +  G  L AMD + +A+V   ++ E F  Y    D+ I + ++++++  ++K     +++  + D   + +  +     +     F + L++ +     IP  EY+ +V + S     I  D ++I D++         +     G++    + L +       E+A + I++ E    ++++ Y+  F +A  +S+   + L ++ P+ +EY+  +   + F LAP+
Sbjct:   11 LKKIVPIVADLISEGQFVATEEGIKLVAMDPASIAMVIWEMKPEAFIDYTIEGDKEI-ITVSMDDLKTIVKKLKQREMVVWETDREKNKLKILARGTIKKT---FSIPLLEGEETETPIPSLEYNNVVELDSKAIKEIIDDASAIADSLKFKAEPPSKLIIKAEGEMKEMTVELTEG------EDAVVSIDIQEEAYASYSIDYLKKFAKAADVSDIAILKLKTDYPLWLEYRYLDKMTLIFILAPR 247          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA1_SULAC (DNA polymerase sliding clamp 1 OS=Sulfolobus acidocaldarius GN=pcn1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.444e-11
Identity = 54/251 (21.51%), Postives = 111/251 (44.22%), Query Frame = 2
Query:   53 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKI--ADFEMKLMDIDSEHLGIPEA-----EYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKI 784
            LK ++E + + +++  F+    G  L A+D +HV+L+ + L  E F+ Y  +     G N   ++K+L  A   + I++++D           SP + KI       ++  I++  +  PE      E+     + S  F     +++++ DTV I   ++ V     G  G+      +N         + +E        + + Y++     T LS+   ++ S+E P+ +E+ +   G + + LAPK+
Sbjct:   11 LKNIVETLTKFIDEGLFEIGQDGIRLVAVDKAHVSLINIELYKELFKEYEVEDEFKFGFNSQYLAKILSIAKRKEEISIESD-----------SPERVKITLGGALNRVFIINNIQVSPPEVPEVNLEFEVKASLSSKAFKTTINEISAVTDTVDIIAVEDKVILKGEGKEGSQ----IENEFSKDTGAISDMEFKNEAKSPYDVNYLSDILSLTNLSDYTRLAFSTEKPLELEFNMEGGGKVTYLLAPKL 246          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: YL823_MIMIV (Uncharacterized protein L823 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L823 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.672e-11
Identity = 60/270 (22.22%), Postives = 121/270 (44.81%), Query Frame = 2
Query:   14 AKMLELRLVQGSLLKKVLEAIKELVNDANFDCSATG----FSLQAMDSSHVALVALLLRSEGFEHYRCDRN-ISMGMNLNNVSKMLKCAGNDD------IITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 790
            + +LE+   +  +LKK+L  I E+ ++  F            +  +  +   L+ L+L+  GF+ Y+C ++ I+  + L ++ + L   G DD      II++K D   +T  F+            E+   +    ++ +P+  +   + + + +F +IC+ + S+ D + IS+T + V FS R      N+  R   +V+       IE +      F +  M  F +    S+ ++I +  + P+V+       G I  + +P IEE
Sbjct:   67 SNILEIVTTKIDVLKKILRLIGEVTSECQFSFQNVNEGGRIIVTELHDNKTILLKLVLKGTGFDFYKCSKSKITARLYLPDIDEALGLIGVDDTNTNPIIISMKKD--KETSIFITRIDNSGFTEQVELPCRESVGLNIPLPKTTFQGKIVINAEKFRKICERICSVSDLIKISLTDKEVSFSAR----YYNLDFRYKHSVESKVLGQTIENY------FFIDGMLKFIKYFQSSDEISIYIKKDFPLVIHGPFDNFGSIYVFTSP-IEE 323          
BLAST of DY262934 vs. ExPASy Swiss-Prot
Match: PCNA_UNCMA (DNA polymerase sliding clamp OS=Uncultured methanogenic archaeon RC-I GN=pcn PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.672e-11
Identity = 54/255 (21.18%), Postives = 110/255 (43.14%), Query Frame = 2
Query:   38 VQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS--EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE-MGYIRFYLAPKIEED 793
            +   + K  +EA+  LV++A F  +    S +A+D ++VA+VA  L ++ F+ +       +G++L     +L     DD + L  ++ +  +              + + L+D  S  +   +P  E    + +  AE  R  K    + D + + V  +       GD+    + + ++  +        ++    V   F+L Y+N   ++   +  VTI L ++ PV   + IA   G + + LAP+IE +
Sbjct:    6 INAEVFKDAIEAVSTLVDEAKFRITKDSISARAVDPANVAMVAFDLNAKAFDTFEATDG-EIGIDLVRFMDILGMTARDDRLELNLNEETRKLEIRTGGLA------YTLSLLDPGSIRKEPKVPALELPGKIVLNGAELKRAVKAAEKVSDHMALGVQDKTFYVEAEGDLDKVRLEIPESNLIS-------LQATSNVRSLFSLDYLNDIVKSLGKAEQVTIDLGTDYPVKFTFSIASGNGTVIYLLAPRIESE 246          
The following BLAST results are available for this feature:
BLAST of DY262934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PCNA3_AERPE6.276e-1323.46DNA polymerase sliding clamp B2 OS=Aeropyrum perni... [more]
PCNA2_SULAC1.070e-1219.84DNA polymerase sliding clamp 2 OS=Sulfolobus acido... [more]
PCNA2_PYRKO1.826e-1220.41DNA polymerase sliding clamp 2 OS=Pyrococcus kodak... [more]
PCNA_NANEQ1.184e-1119.84DNA polymerase sliding clamp OS=Nanoarchaeum equit... [more]
PCNA1_SULAC3.444e-1121.51DNA polymerase sliding clamp 1 OS=Sulfolobus acido... [more]
YL823_MIMIV7.672e-1122.22Uncharacterized protein L823 OS=Acanthamoeba polyp... [more]
PCNA_UNCMA7.672e-1121.18DNA polymerase sliding clamp OS=Uncultured methano... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262934 ID=DY262934; Name=DY262934; organism=Citrus clementina; type=EST; length=1100bp
CAAGAAACTCGCAGCGAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCC
TTCTCAAGAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAAC
TTTGACTGCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCA
CGTGGCGCTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACC
GCTGTGACCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAG
ATGCTTAAGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGA
CGGCAGCGATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGA
TTGCTGATTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGT
ATACCGGAGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTT
TGCTAGAATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTTGTGATTT
CTGTCACAAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACT
GCTAATATTGTGCTCAGACAAAATACTACAGTAGACAAGCCAGAAGAAGC
AACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGAT
ACATGAATTCATTCACAAGGGCTACTCCATTGTCGAATACTGTTACTATC
AGCCTATCCTCAGAATTGCCCGTTGTGGTCGAATACAAGATTGCTGAGAT
GGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAGGATG
AGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGCATTT
TGTTGAATCAAGTTACTCCTATATTTTAAGTTCGCTTTTAGAATGTTTCT
CGTAAATCTTCATGTTGGAAAACCAAGCGTTTGTAGTTCGGTAGATTGNT
AAAAATTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACATGTA
ATCATTCCCTTTGTCCCTGGTGCTTTGAAGAGTAGGCTTTAATGGACTTG
AAACTTTCCAAATTTATCAAAAATGAAACCATTTCTGAATGTTTGGGCCA
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