DY262941

Overview
NameDY262941
Unique NameDY262941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1336
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262941 vs. ExPASy Swiss-Prot
Match: KS6A5_MOUSE (Ribosomal protein S6 kinase alpha-5 OS=Mus musculus GN=Rps6ka5 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.826e-11
Identity = 38/126 (30.16%), Postives = 61/126 (48.41%), Query Frame = 3 
Query:  510 LQNMIKVATVMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYERPDQNYIVS---TRHYRAPEVILGLGWTYPCDIWSVGCILVELCTGEALFQTHE 878
            ++ ++   + MHD+ ++H DLKPEN+L                              +  IKVIDFG    + PD   + +   T HY APE++   G+   CD+WS+G IL  + +G+  FQ+H+
Sbjct:  589 MRKLVSAVSHMHDVGVVHRDLKPENLLFTDEN------------------------DNLEIKVIDFGFARLKPPDNQPLKTPCFTLHYAAPELLTHNGYDESCDLWSLGVILYTMLSGQVPFQSHD 690
[Close]
BLAST of DY262941 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 41/129 (31.78%), Postives = 64/129 (49.61%), Query Frame = 3 
Query:  540 MHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYERPDQNYI--VSTRHYRAPEVILG-LGWTYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLG 917
            +H L + H D+KP+N+LL +S                          +S +K+ DFGS       +  +  + +RHYRAPE+I G   +T   D+WS+GC+L EL  G+ LF     ++ L  + +VLG
Sbjct:  170 IHSLGICHRDIKPQNLLLDTS--------------------------TSTLKLCDFGSAKILIKGETNVSYICSRHYRAPELIFGSTNYTTTIDVWSLGCVLAELLLGQPLFPGENGIDQLVEIIKVLG 272
The following BLAST results are available for this feature:
BLAST of DY262941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
KS6A5_MOUSE5.826e-1130.16Ribosomal protein S6 kinase alpha-5 OS=Mus musculu... [more]
GSK3_DICDI9.937e-1131.78Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BE10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262941 ID=DY262941; Name=DY262941; organism=Citrus clementina; type=EST; length=1336bp
TTCGTTTCAATCGCATCAAGATCTCGATCTCTCTCTTATTTCCTCGCCGT
GAGCTGCGATCATGGAGATGGAGCGCGTGACGGAGTTTCCTTTTTCGAAT
CTGGATCGGCGTCCTCGTAAGCGAGCGCGTTTGGGCTGGGACGTGCCTCA
GGTACCGAAGGCTCAGGTAGGATTATTTTGTGGACAAGAGGTTGGGAATG
TAACAAGCTTTGCACCTCCAAGAGCTCCCTCAGACCATGTCACTAGTTCT
TCTCTATTTGTAAAGGGAGTGGCTCGAAATGGTTCTCCCCCATGGCGTGA
GGATGACAAAGATGGCCATTATATGTTTGCGCTTGGAGAAAATTTAACTT
CTCGCTATAAGATTCACAGCAAAATGGGTGAAGGAACCTTCGGTCAGGTT
TTGGAATGCTGGGATCGTGAGAGGAAAGAAATGGTAGCCATTAAAATTGT
TCGTGGGATCAAGAAATATCGTGAGGCTGCTATGATAGAAATTGAAGTAC
TTCAACAACTTGCAAAACATGATAAAGGTGGCAACCGTTATGCATGATCT
GTGTATGATACATACTGACTTAAAGCCTGAGAATGTTCTACTTGTTTCTT
CCGAGTATATTAAGGTTCCTGACTACAAGAGTTCTTCGCACACACCAAAA
GATTCTTCCTACTTTAAAAGAATGCCAAAGTCAAGTGCTATTAAGGTGAT
TGATTTTGGCAGCACAACTTATGAGCGCCCAGATCAGAACTACATTGTAT
CCACCCGACATTATCGTGCGCCGGAGGTTATCCTTGGACTTGGGTGGACT
TACCCATGTGATATATGGAGTGTTGGTTGTATCTTAGTGGAGTTATGCAC
GGGTGAGGCATTATTCCAAACTCATGAGAACTTGGAACACCTTGCGATGA
TGGAACGGGTGCTTGGTCCCTTGCTTCACATATGCTGAAGAGAGTAGACC
GACATGCCGAAGAATATGGTAGAAGGGGGGGGTAGGTTGGGACTGGGCCG
AAGGGGGCACCCTCAAGGGAAAGTAATAAAATCTGTGATGAAGCTACCCC
GTCCTTCAAAACCTAAAAATGCCGCCCCGGTGACCATTTTCCCTGGGGGA
TTTTTCCCCTTTTATTTGGAAGGGCAGTGGTTAGGGTTAGATCCATCGGG
AAAGGGCTAAATGGGGCGGGGGAAACCCCTTTAGGGACTCCCCTTTTTTT
TAACAAAAAAAATCATCTCTTAAGGAAAAAAAGGGGAACCCCCAATTATT
TTTGTTTTCACCAAAACATTTTTTCCCGGGTGGTGTGCCAAATAAGGGGC
GGGGGGTGTTGGTAAGAAAAACCCCAAAAAGAAAAT
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