DY262976

Overview
NameDY262976
Unique NameDY262976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_PSEA6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=astD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.889e-23
Identity = 82/231 (35.50%), Postives = 116/231 (50.22%), Query Frame = 2
Query:  242 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKI-QGLTAPADGPYHVQTL---HEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATGK 922
            I GQ+  +  G    ++DP     I       +E VN+AVS+ARKA     W   T  +R   + RF +LL  + D +A     + GKP  ++A     M  ++     G +++  Q  T   + P  V      H+P GV     P+NFP  +    + PAL  GN IV K ++ TPL A    +L  +AGLP GVLN+V G   T G ALA+H ++D L FTGS+ TGK
Sbjct:    8 IAGQW-HAGQGHDIESIDPAKKRQIWQAKSASSEQVNQAVSSARKA--TVTWAACTFEQRLAYVKRFGELLAENKDMLALTIAQETGKPLWETATEVGAMMGKI-----GISERAYQERTGLVENPMPVGKAFIRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNCIVFKPSDLTPLVAERTVQLWEKAGLPKGVLNLVQGEVET-GKALAAHPDLDGLFFTGSSRTGK 229          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ROCA_GEOTN (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.030e-22
Identity = 71/214 (33.18%), Postives = 104/214 (48.60%), Query Frame = 2
Query:  308 DVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQ-GLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATGKNVLQLAAK 946
            +VI  VA+   E   RA+  A +AF    W R +   R+ I+ R A ++ R   E +A    + GKP+ + A  +         YY     K++ G+   +      +  + P+GV   I PWNFP  + A     AL  GNT++LK A  TP+ A   +++L EAGLP GVLN + G G   G  L  H     ++FTGS   G  + + AAK
Sbjct:   62 EVIGRVAKANKELAERAMKTADEAFRT--WSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGKPWRE-ADADTAEAIDFMEYYGRQMLKLKDGIPVESRPGETNRFFYIPLGVGVVISPWNFPFAIMAGTTVAALVTGNTVLLKPASATPVVAYKFAEVLEEAGLPAGVLNYIPGSGAEVGDYLVEHPRTRFISFTGSRDVGIRIYERAAK 272          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.030e-22
Identity = 66/216 (30.56%), Postives = 117/216 (54.17%), Query Frame = 2
Query:  293 DPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKL----LHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATGKNV 928
            DP T + I  +   + E+   A+    K   +     ++  +R KI+++ A+ L    D  A   + D GKP +QS + EV  T    +  A +A +++G T  ++    + T  EP+GV G I P+NFPL +   K+GPA+A GN++VL  + + P+ A+Y++K+    L +  +P GV N+ +G G   G  ++ +  V+ ++FTGS   G+++
Sbjct:   17 DPYTLENIEKITALDREETKNAIEVTEK--HKEIMKNLSPSKRYKILMKVAEHLSSKKDFFAKTISIDVGKPIKQS-KIEVDRTLTALKLSAFYAKELRGETINSENGL-IFTKKEPLGVIGAITPFNFPLNLATHKIGPAIATGNSVVLHPSSKAPIVAIYLTKIIEHVLKQMDIPRGVFNLATGNGEIVGDEISKNDNVNMVSFTGSVEVGESI 228          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_YERPS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pseudotuberculosis GN=astD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.030e-22
Identity = 76/228 (33.33%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  236 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            L I G++    +G +F   DP +   +      +  DV  A  AAR AF    W R +  +R+ +I +FA LLE+H   +A   + +  KP+ ++      M  ++      +  +      P      V   H P GV     P+NFP  +    + PAL  GNT+V K +E TP +A    KL  EAG+P GVLN+V G G   G ALA+  ++D L FTGS  TG
Sbjct:   17 LFIQGEW-RIGNGVSFEKQDPMSQQRLWQARAADHTDVTLACHAARAAFPA--WARASLEQRATVIQQFAALLEQHKQSLARTISLETSKPYWETLTEVQAMIGKVAISLQAYQTRTGHSQTPMGDSMSVLR-HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQEAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTG 239          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_YERPB (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=astD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.030e-22
Identity = 76/228 (33.33%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  236 LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            L I G++    +G +F   DP +   +      +  DV  A  AAR AF    W R +  +R+ +I +FA LLE+H   +A   + +  KP+ ++      M  ++      +  +      P      V   H P GV     P+NFP  +    + PAL  GNT+V K +E TP +A    KL  EAG+P GVLN+V G G   G ALA+  ++D L FTGS  TG
Sbjct:   17 LFIQGEW-RIGNGVSFEKQDPMSQQRLWQARAADHTDVTLACHAARAAFPA--WARASLEQRATVIQQFAALLEQHKQSLARTISLETSKPYWETLTEVQAMIGKVAISLQAYQTRTGHSQTPMGDSMSVLR-HRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQEAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTG 239          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.346e-22
Identity = 63/216 (29.17%), Postives = 118/216 (54.63%), Query Frame = 2
Query:  293 DPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKL----LHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATGKNV 928
            DP T + I  +   + E+   A+  A K  ++     ++  +R  I+++ A+ +    D  A   + D GKP +QS + EV  T    +  A +A +++G T  ++    + T  EP+GV G I P+NFPL +   K+GPA+A GN++VL  + + P+ A+Y++K+    L +  +P G+ N+ +G G   G  ++ +  ++ ++FTGS   G+++
Sbjct:   17 DPYTLENIEKITALDREETKSAIEVAEK--NKEIMKNLSPSKRYSILMKIAEQISLKKDLFAKTISIDVGKPIKQS-KIEVDRTLTALKLSAFYAKELRGETINSENGL-IFTKKEPLGVVGAITPFNFPLNLITHKIGPAIATGNSVVLHPSSKAPIVAIYLTKIIEHVLKQMDVPRGIFNLATGNGDIVGDEISKNDNINMVSFTGSVEVGESI 228          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_VIBCM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=astD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.346e-22
Identity = 72/226 (31.86%), Postives = 119/226 (52.65%), Query Frame = 2
Query:  242 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            I G++V + +G+   +  P + +++        E V+ AV+AAR+AF +  W +    ER + +L FA+L++ ++++IA +   + GKP  ++      +  ++      + ++       A G   V   H P+GV     P+NFP  +    + PAL  GNT+V K +EQTP +   + +L  +AGLP GV+N+V G   T G ALA    +D L FTGS  TG
Sbjct:    5 IAGEWV-AGTGEKLQSHTPYSHELLWQGYSASGEQVDAAVNAARRAFLD--WKKRPFAEREQKVLAFAELVKANSEQIAQVIAKETGKPLWETRTEAASIAGKIAISIRAYHERTGETVREAAGNQLVLR-HRPLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQGSKET-GIALAQSRGIDGLLFTGSANTG 225          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_SHEWM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=astD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.346e-22
Identity = 82/227 (36.12%), Postives = 114/227 (50.22%), Query Frame = 2
Query:  242 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKA-FDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            INGQ+V +  G    + +P   +VI       AE VN AV AAR+  FD   W  +    R  I+  +   LE H  E+A +   + GKP  ++A     M  ++    A + +K  G +            H+P GV     P+NFP  +    + PAL  GNT+V K +E TP  A  + KL  +AGLP GV+N+V G   T G ALASH ++D L FTGS+ TG
Sbjct:    5 INGQWV-AGLGHEVTSKNPANSEVIWSSKTATAEQVNTAVEAAREVQFD---WFMLGFEGRLAIVEAYKTQLEEHKAEMAEVIAQETGKPQWETATEAGAMIGKIGLSVAAY-NKRTGSSENDTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVET-GKALASHEQIDGLFFTGSSRTG 225          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_VIBCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.758e-22
Identity = 72/226 (31.86%), Postives = 118/226 (52.21%), Query Frame = 2
Query:  242 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            I G++V + +G+   +  P + +++        E V+ AV AAR+AF +  W +    ER + +L FA+L++ ++++IA +   + GKP  ++      +  ++      + ++       A G   V   H P+GV     P+NFP  +    + PAL  GNT+V K +EQTP +   + +L  +AGLP GV+N+V G   T G ALA    +D L FTGS  TG
Sbjct:    5 IAGEWV-AGTGEKLESHTPYSHELLWQGYSASGEQVDAAVKAARRAFLD--WKKRPFAEREQKVLAFAELVKANSEQIAQVIAKETGKPLWETRTEAASIAGKIAISIRAYHERTGETVREAAGNQLVLR-HRPLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQGSKET-GIALAQSRGIDGLLFTGSANTG 225          
BLAST of DY262976 vs. ExPASy Swiss-Prot
Match: ASTD_VIBC3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=astD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.758e-22
Identity = 72/226 (31.86%), Postives = 118/226 (52.21%), Query Frame = 2
Query:  242 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVSKLLHEAGLPPGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTATG 919
            I G++V + +G+   +  P + +++        E V+ AV AAR+AF +  W +    ER + +L FA+L++ ++++IA +   + GKP  ++      +  ++      + ++       A G   V   H P+GV     P+NFP  +    + PAL  GNT+V K +EQTP +   + +L  +AGLP GV+N+V G   T G ALA    +D L FTGS  TG
Sbjct:    5 IAGEWV-AGTGEKLESHTPYSHELLWQGYSASGEQVDAAVKAARRAFLD--WKKRPFAEREQKVLAFAELVKANSEQIAQVIAKETGKPLWETRTEAASIAGKIAISIRAYHERTGETVREAAGNQLVLR-HRPLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQGSKET-GIALAQSRGIDGLLFTGSANTG 225          
The following BLAST results are available for this feature:
BLAST of DY262976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_PSEA67.889e-2335.50N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ROCA_GEOTN1.030e-2233.181-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
LADH_METMP1.030e-2230.56Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ASTD_YERPS1.030e-2233.33N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_YERPB1.030e-2233.33N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
LADH_METM51.346e-2229.17Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ASTD_VIBCM1.346e-2231.86N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEWM1.346e-2236.12N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBCH1.758e-2231.86N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBC31.758e-2231.86N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BH10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262976 ID=DY262976; Name=DY262976; organism=Citrus clementina; type=EST; length=1247bp
AAAAAAAAAAAAAAAGATAAAAATTAAAGTTGTGATGGCTGCAAGAAGGA
TTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCTGTTT
TCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTGCCGC
CTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAAGATC
CAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAATGGA
CAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACCCCAG
GACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGACGTCA
ACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTGGCCT
AGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTGATTT
GCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGATAACG
GGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCACGCGT
TTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCACTGC
TCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATTGGTG
TAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGCTTGG
AAAGTTGGGCCTGCATTAGCATGTGGCAACACTATTGTTCTTAAGACAGC
AGAGCAGACTCCCCTCTCAGCTCTTTATGTATCAAAGCTACTTCATGAGG
CTGGACTTCCTCCAGGTGTTCTAAATATAGTTTCAGGTTATGGTCCAACT
GCCGGTGCTGCTCTTGCTAGTCACATGGAAGTGGATAAGCTTGCTTTCAC
TGGATCAACTGCGACCGGGAAAAATGTACTTCAATTGGCAGCGAAAAGCA
TCTTAAGCCAGTGACATAAAACCTTGGAGGGAAATCTCTTTTAATGTATG
TGAAGATGCTAATGTAGATAAAGCCGCTGAACTGGGCCACTAGGCCTTAT
TCTTTAACCAGGAACAGGCTGTTGCGCTTGGTCCTCGAACTTTTTGTACT
TGAAGGGGTGGAAGAATCTTTTTTAAAAAAAACAAAAGGCCTTTGGAAAG
AAAACCGGTTTTTGTGGGGGTTCCGTTTAAGGGGGGGAAAATCAAAAAAA
GGAACCCTCCAAAATTATTATTAAAAAAAAATTTTTAAAAAAATTTT
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