DY262978

Overview
NameDY262978
Unique NameDY262978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1249
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: NUOG_PSESM (NADH-quinone oxidoreductase subunit G OS=Pseudomonas syringae pv. tomato GN=nuoG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.150e-33
Identity = 69/171 (40.35%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  304 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 801
            + VDG  L++     +LQAC   G+DIP FC+H  L   G CR C V     E +   + V SC  PA     I  +   +K  R  V+E+L+ NHP DCP+C++GG C LQD ++  G +  R+   KR+  ++ LGP +   M RCI C RCVRF  + AG  DLG+ G
Sbjct:    4 IHVDGKALEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDTRGRIVMSCMTPATDNTWISIEDDESKAFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFIAHEMNRCIACYRCVRFYKDYAGGTDLGVYG 174          

HSP 2 Score: 28.1054 bits (61), Expect = 5.150e-33
Identity = 12/34 (35.29%), Postives = 20/34 (58.82%), Query Frame = 3
Query:  843 MTSELSGNVIDICPVGSLTFKLFAFK-ARNWEFK 941
            + SE SGN+ ++CP G  T K  + +  R W+ +
Sbjct:  189 LESEFSGNLTEVCPTGVFTDKTHSERYNRKWDMQ 222          
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAP (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.717e-30
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  301 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV-----EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIG 825
            +++VDG    + +   +LQAC  +G++IP FC+H  L   G CR C V      ++   K + SC  P + G  I  +   +KK R  ++E LL NHP DCP+C++GG C LQD ++    +   +   KR+  ++ LG  +K  M RCI C RCVR+  + A   DL + G  +    G
Sbjct:    3 KIYVDGKAYCMSESDNLLQACLSSGLNIPYFCWHPILGSLGACRQCAVTQYNSSLDNQGKLIMSCMTPVIDGTIISINDDTSKKFRSNIVELLLTNHPHDCPVCEEGGNCHLQDMTVMTTHNFRNYRFSKRTHKNQYLGSFIKHEMNRCIGCYRCVRYYRDYADGTDLDVYGANNNIYFG 182          

HSP 2 Score: 31.187 bits (69), Expect = 1.717e-30
Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGSLTFKLFAFK-ARNWEFKGPETIDVTDAVGSN 983
            ++ +E SGN+I+ICP G  T K  + K  R W+ +    I    ++G N
Sbjct:  188 VLENEHSGNLIEICPTGVFTDKTHSKKYNRKWDMQYAPGICQNCSIGCN 236          
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: NUOG_BUCAI (NADH-quinone oxidoreductase subunit G OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.934e-30
Identity = 61/180 (33.89%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  301 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-----EKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIG 825
            +++VD     + +   +LQAC   G++IP FC+H  L   G CR C V       ++  + + SC  P   G  I   +  ++  R  ++E LL NHP DCP+C++GG C LQD ++        +   KR+  ++ LGP +K  M RCI C RCVR+  E A   D G+ G  +    G
Sbjct:    3 KIYVDSKIYNVNESDNLLQACLSVGINIPYFCWHPLLGSLGACRQCAVTQYDNFQDRKGRLIMSCMTPVTDGAIISIKSTESEVFRSAIVELLLTNHPHDCPVCEEGGHCHLQDMTVMVKHSMRNYRFKKRTHKNQYLGPFIKHEMNRCIACYRCVRYYNEYADGVDFGVYGSNNNVYFG 182          

HSP 2 Score: 31.5722 bits (70), Expect = 4.934e-30
Identity = 18/49 (36.73%), Postives = 27/49 (55.10%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGSLTFKLFAFK-ARNWEFKGPETIDVTDAVGSN 983
            ++ SE SGN+I++CP G  T K  + K  R W+ +    I    +VG N
Sbjct:  188 VLESEHSGNLIELCPTGVFTDKTHSKKYNRKWDMQYAPGICHNCSVGCN 236          
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: NUOG_BLOFL (NADH-quinone oxidoreductase subunit G OS=Blochmannia floridanus GN=nuoG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.128e-29
Identity = 61/199 (30.65%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  298 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS------------PKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVENL*QVNF 858
            I ++++     +     VL+ C   G ++P FC+H  L   G+CR C V++  +             + V SC  P +  M I       ++ R+ ++E L++NHP DCP+C++GG C LQD ++       R+   KR+  ++ LGP +   M RCI C RCVR+  + AG  DLG+ G       G   + + Q  F
Sbjct:    3 IPIYIEEKKYMVEDTKNVLEVCLSLGFNVPYFCWHPALGSIGSCRQCAVKLYDNLHCVPDSKHINFGRLVMSCMTPVIKDMYISLFDKELQEFRKNILELLMVNHPHDCPVCEEGGNCHLQDMAVMVEHTYRRYRFTKRTHYNQYLGPFITHEMNRCITCYRCVRYYKDYAGGNDLGVFGVHDNIYFGRVQDGILQSEF 201          

HSP 2 Score: 33.113 bits (74), Expect = 3.128e-29
Identity = 18/49 (36.73%), Postives = 27/49 (55.10%), Query Frame = 3
Query:  840 LMTSELSGNVIDICPVGSLTFKLFAFK-ARNWEFKGPETIDVTDAVGSN 983
            ++ SE SGN+++ICP G  T K  +   AR W+     +I    +VG N
Sbjct:  196 ILQSEFSGNLVEICPTGVFTDKTQSKNYARKWDITFAPSICHQCSVGCN 244          
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: HOXU_RALEH (NAD-reducing hydrogenase hoxS subunit gamma OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxU PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.654e-12
Identity = 45/160 (28.12%), Postives = 70/160 (43.75%), Query Frame = 1
Query:  295 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 774
            +I++ +DG  L   +G T++      GV IP  CY       G CR+C V+V  +    A+C +    G+ ++ + P     R+ ++EFL      +CP C++ G C LQ           RF       V  +    +     RCI C RCV F  + A
Sbjct:    2 SIQITIDGKTLTTEEGRTLVDVAAENGVYIPTLCYLKDKPCLGTCRVCSVKV--NGNVAAACTVRVSKGLNVEVNDPELVDMRKALVEFLFAEGNHNCPSCEKSGRCQLQAVGYEVDMMVSRFPYRFPVRVVDHASEKIWLERDRCIFCQRCVEFIRDKA 159          
BLAST of DY262978 vs. ExPASy Swiss-Prot
Match: FDHL_BACSU (Putative formate dehydrogenase yrhE OS=Bacillus subtilis GN=yrhE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.322e-11
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 1
Query:  295 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICD-QGGECDLQDQSMAFGSDRGRF----TEMKRSVVDKNLGPLVKTVMTRCIQCTRCV 753
            +I V VDG  ++   G T+L      G++ P+ C+   +     C  C+VE   + K V SCA  A  GM I       K+A+   M+ LL NH L C +CD   G C L + +   G +  ++     E     VD +  P  +    +CI C +CV
Sbjct:    6 SISVRVDGTEIQARAGATILDILNENGIEYPQICHVPEVDPIQTCDTCIVEA--NGKLVRSCATVAENGMSIDLSGNRVKEAQTEAMDRLLENHLLYCTVCDNNNGNCTLHNTAEMMGIEHQKYPYTPKEDPSCAVDMS-HPFYRYDPNQCIACGQCV 160          
The following BLAST results are available for this feature:
BLAST of DY262978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NUOG_PSESM5.150e-3340.35NADH-quinone oxidoreductase subunit G OS=Pseudomon... [more]
NUOG_BUCAP1.717e-3035.00NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BUCAI4.934e-3033.89NADH-quinone oxidoreductase subunit G OS=Buchnera ... [more]
NUOG_BLOFL3.128e-2930.65NADH-quinone oxidoreductase subunit G OS=Blochmann... [more]
HOXU_RALEH1.654e-1228.13NAD-reducing hydrogenase hoxS subunit gamma OS=Ral... [more]
FDHL_BACSU5.322e-1130.38Putative formate dehydrogenase yrhE OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262978 ID=DY262978; Name=DY262978; organism=Citrus clementina; type=EST; length=1249bp
TTTTAATCTCTGAAAAACGAACACTGGTACAGCTGAAGAACAACGTTCAA
CATCAGACCACACTCGAGTTTGAGCGAGAGAGAATCGAAAATGGGGTTAG
GGTTGTTAGCATCGAGGACGATGAGACCCCTCAAGTATTCAAACTCCAGA
GTCTTTATCCGGTCCATCGTTTCCAAACCGGAGCTCCAATCGCCCGAAGC
TTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCTCCCCCCTCGAT
CGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCGGAAGATGCAATC
GAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAGGGCTTCACCGT
TTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAGATTTTGTTATC
ACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTCTCGTTGAAGTC
GAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCTGCTCTTCCCGG
AATGAAAATTAAGACGGATACACCTTTAGCTAAGAAGGCGAGAGAAGGGG
TGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTCCAATTTGTGAT
CAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCTTTCGGTTCTGA
TCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGATAAGAATCTTG
GTCCGTTGGTGAAGACTGTCATGACTCGATGTATCCAATGCACAAGGTGT
GTTAGGTTTGCAACAGAGGTTGCTGGAGTACAAGATCTTGGCATGCTAGG
TCGTGGCAGTGGAGAGGAAATTGGAACTTACGTGGAAAACTTATGACAAG
TGAACTTTCTGGAAATGTGATAGATATTTGTCCTGTGGGAAGCCTTACTT
TCAAACTTTTCGCATTCAAAGCCCGAAACTGGGAGTTTAAAGGACCAGAA
ACCATTGATGTAACTGATGCAGTCGGATCTAACTTTCAATAAACAGCAGG
GTCCAGAAGGTCGGCGCATCCTCCCGCGGTTAATGAGGATATAATGAAAA
AGGGATTTCAAAAAAAACCCGTTTTTGTTATGTAGGTTTGAAAAGGGAAA
GGCCAAAAGGATCCATGGGATTCGGGGGGGCCGAAGGGGGGCTTTAGGGG
GGTAAAAAGGGGAAAAAAGGCCTTGGGGGGGGGGGTGTGGAGGGTTTTGT
CTTTAGGGGGCAAAAACCAAAGGAAAAATTTGGGGGGGGGAAGAATGGG
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