DY262980

Overview
NameDY262980
Unique NameDY262980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.854e-13
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  579 DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGST 788
            D + WRKYGQK  + +P PR Y++CS +  C  +K+V+RS  D ++ + TY GEH HP P   ++ +GST
Sbjct:  166 DLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTHRNSLAGST 235          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.169e-12
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  477 EESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVTAGSVPCST 827
            E   KK ++   K  + +V            ++ D + WRKYGQK  + +P PR+Y++CS +  C  +K+V+R+ ++      TY  EHNH LP + ++ +GST R  T+   P  T
Sbjct:  109 ESKSKKSKKNQQKRVVEQVKEEN--------LLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNSLAGST-RAKTSQPKPTLT 216          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.169e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  570 VVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTS 791
            V+ DGY+WRKYGQKV ++   PR+Y++C+    C VKK+V+R  +D  +++ TYEG H H     +D  S STS
Sbjct:  221 VLDDGYRWRKYGQKVVKNTQHPRSYYRCT-QDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSLSTS 293          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.527e-12
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  579 DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLP 758
            D + WRKYGQK  + +P PR Y++CS +  CP +K+V+RS  D S L+ TY  +HNHP P
Sbjct:   71 DSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFP 130          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.527e-12
Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:  513 KAKISRV-HYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNH 749
            ++ +S+V  Y  +  + ++ +  DGY+WRKYGQK  +++P+PR+Y+KC+  P C  KK+V+RS+++ +  + TYEG H H
Sbjct:   92 RSTLSKVDRYTLKVKNNSNGMCDDGYKWRKYGQKSIKNSPNPRSYYKCT-NPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.527e-12
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  456 SESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNH 749
            S S S D ++  K R    K +  R  ++T+ SD    V+ DGY+WRKYGQKV +++  PR+Y++C+   +C VKK+V+R  ED  +++ TYEG HNH
Sbjct:  111 SNSGSGDMKNKVKIRR---KLREPRFCFQTK-SDVD--VLDDGYKWRKYGQKVVKNSLHPRSYYRCTH-NNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.401e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  513 KAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHP 752
            K K  R  +RT+ SD    ++ DGY+WRKYGQK  +++  PR+Y++C+    C VKK+VQR  ++ S++  TYEG HNHP
Sbjct:   12 KMKNPRFSFRTK-SDAD--ILDDGYRWRKYGQKSVKNSLYPRSYYRCT-QHMCNVKKQVQRLSKETSIVETTYEGIHNHP 87          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.802e-12
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  450 GNSESSST--DEESCKKPREEHIKAKIS--RVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNH 749
            G S S++T   +ES  +  +E  + K +  RV +RT        V+ DG++WRKYG+K  ++N + R Y+KCS +  C VKK+V+R  +D + ++ TYEG HNH
Sbjct:   67 GGSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKID---VMDDGFKWRKYGKKSVKNNINKRNYYKCS-SEGCSVKKRVERDGDDAAYVITTYEGVHNH 166          
BLAST of DY262980 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.205e-11
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  438 ALTMGNSESSSTDEES-CKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCS--FAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGST 788
            ++ + + ESS T+  S   K +++H ++++ +V          ++   D + WRKYGQK    +  PR Y++C+  F   C   K+VQRS  D ++L  TY  EHNHP P +  A + ST
Sbjct: 1167 SMLLSDCESSMTENLSDVPKKKKKHSESRVKKV------VSIPAIDEGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNHPRPTKRKALADST 1280          
The following BLAST results are available for this feature:
BLAST of DY262980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK27_ARATH6.854e-1344.29Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK29_ARATH1.169e-1232.48Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRK13_ARATH1.169e-1245.95Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK69_ARATH1.527e-1250.00Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK49_ARATH1.527e-1240.00Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK12_ARATH1.527e-1242.86Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK43_ARATH3.401e-1246.25Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK51_ARATH5.802e-1239.42Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRK52_ARATH2.205e-1133.33Probable WRKY transcription factor 52 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262980 ID=DY262980; Name=DY262980; organism=Citrus clementina; type=EST; length=1175bp
AAAATTTAAGTAATACAAGTCTTTTGAGAAAATTTAAGTAATACAAGTCT
TTTGAGTAAATTTGTTCTTCTTGTTGGTCGTTAGCTATGGATTCTTTTTC
ATGGGTTGATACTTCATTGGATCTCAACTCCAACCCTCTCCGATTGAATG
ATGAAGTTCTGGCGCCGGCGAAGAAAGAATTGCAAGGCGATTTTTCTGGT
TTTGGGAACAAGGATTCTGTGAAACAAGAGACCGGAGCTTTAGTGGCGGA
ATTGAACCGCGTGAGTGCAGAAAATAAGAAGCTAACAGAAACGTTAACAG
CGTTGTGTGAGAGTTACAATGCTTTGAGAAACCAATTGATGGATTATATG
AGCAAGAATCCTGAGATTAGTAAGGAGGTTTTTATTAGTTCATCGAAGAA
ACGAAAATCCGAAAGCAGCAACAACGACAACAATGTTGCGCTAACAATGG
GAAATTCTGAAAGCAGTTCTACTGATGAAGAATCTTGCAAGAAACCAAGG
GAAGAACACATCAAGGCAAAGATTTCGAGAGTTCATTATAGGACCGAGCC
ATCTGATACCACCAGCCTTGTTGTGAAAGATGGATATCAATGGAGGAAAT
ACGGACAAAAGGTCACTAGAGATAATCCTTCTCCTAGAGCTTACTTCAAA
TGCTCTTTCGCTCCAAGCTGCCCAGTTAAAAAGAAGGTACAAAGAAGTGT
TGAGGACCAATCTGTATTGGTAGCGACTTACGAGGGGGAGCACAACCATC
CACTTCCGTGTCAAATGGACGCAGCATCCGGTTCAACAAGCCGTTGTGTG
ACGGCCGGTTCGGTCCCCTGCTCGACCGGACAAACCATCACTCTTGATCT
CACAAGGTCTAATAATAAGTCCAGCAACGAAAGATAAAGCTTTGAAACAA
AAATTGACACCAGTCCAGAAGTGAGAAATTTTTTGGTGGAACAGATGGCT
TCTTCATTGAACAAAGATCCTAAATTTTACAACGGCGCTGGCTGCCGGAA
TTTTCTGGGAAAATATTTCAACATAATCTAAGAAGAAAAATGGTGACTTT
CATAAAAAAATTGCTGAATGGTTTCGGTTGTTCCTTTCTTTTTTCCTTTT
TTTCATTTAAGAAATTTAGGCGGGCTGGGGAAATTTAAGGAGGTCTTTTT
GTAAAAAACGCCCTTTTGAAAAGGG
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