DY263012

Overview
NameDY263012
Unique NameDY263012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263012 vs. ExPASy Swiss-Prot
Match: FNTB_YEAST (Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae GN=RAM1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.545e-16
Identity = 48/176 (27.27%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  383 YWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKLD----ILDADKVSNYVAGLQNGDGSFSGDIW-GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFG-CTPGGESHSGQIFCCVGALAIAXALHHVD-KDLLGW 883
            YW   +L ++ +  L    +  ++  +       G F G  G   H+  T +A+  L+L D +D     +D   +  ++  L+  +G F   +  GEVDTR  Y A+   ++L  L +   +  + Y+ +C+N +GGFG C    E+H G  FC   +LAI  ++  ++ + LL W
Sbjct:  111 YWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQLSHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEW 286          

HSP 2 Score: 31.9574 bits (71), Expect = 4.545e-16
Identity = 20/58 (34.48%), Postives = 29/58 (50.00%), Query Frame = 3
Query:  876 LAGWVCERQVKSG-GLYGRPEKLPDVCYSWWVLSSLVMIDKVHW---INKGQLVKFLL 1037
            L  W   RQ++   G  GR  KL D CYS+WV  S  +++   +    NK  L  ++L
Sbjct:  283 LLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYIL 340          
BLAST of DY263012 vs. ExPASy Swiss-Prot
Match: PGTB1_BOVIN (Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-16
Identity = 63/219 (28.77%), Postives = 99/219 (45.21%), Query Frame = 2
Query:  293 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI-----LKCQDESG----GFAGN----IGHDP-------------HVLYTLSAVQVLALF-DKLDILDADKVSNYVAGLQNGDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAXALHHV 862
            D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI     L  +D S     GF G+    I  +P             H+  T + +  L +  D L  ++ +     +  LQ  DGSF     G E D RF Y A C   +L     +++ KA+ YI    + D G     G ESH G  FC + +L +   L  V
Sbjct:   23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV 239          

HSP 2 Score: 34.2686 bits (77), Expect = 4.561e-16
Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = 3
Query:  885 WVCERQVKSGGLYGRPEKLPDVCYSWWVLSSLVMIDKVHWIN 1010
            W   RQ    G +GRP K  D CYS+WV ++L ++    + N
Sbjct:  251 WCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTN 290          
BLAST of DY263012 vs. ExPASy Swiss-Prot
Match: PGTB1_HUMAN (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.928e-16
Identity = 63/219 (28.77%), Postives = 99/219 (45.21%), Query Frame = 2
Query:  293 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI-----LKCQDESG----GFAGN----IGHDP-------------HVLYTLSAVQVLALF-DKLDILDADKVSNYVAGLQNGDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAXALHHV 862
            D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI     L  +D S     GF G+    I  +P             H+  T + +  L +  D L  ++ +     +  LQ  DGSF     G E D RF Y A C   +L     +++ KA+ YI    + D G     G ESH G  FC + +L +   L  V
Sbjct:   23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV 239          

HSP 2 Score: 34.2686 bits (77), Expect = 5.928e-16
Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = 3
Query:  885 WVCERQVKSGGLYGRPEKLPDVCYSWWVLSSLVMIDKVHWIN 1010
            W   RQ    G +GRP K  D CYS+WV ++L ++    + N
Sbjct:  251 WCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTN 290          
BLAST of DY263012 vs. ExPASy Swiss-Prot
Match: PGTB1_DICDI (Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.984e-12
Identity = 54/209 (25.84%), Postives = 91/209 (43.54%), Query Frame = 2
Query:  341 FESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DVISW-----ILKCQD------ESGGFAGN--IGHD-------------------PHVLYTLSAVQVLALFDKLDILDADK---VSNYVAGLQNGDGSFSGDI-WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAXAL 853
            + S +  HL L   ++ ++ LD+L K D +++E  D+I+W     IL  +D      E+ GF G   +G +                   P    T  A+ +L +    D    +K   + +     +  DG+ SG    G+ D R  + A     IL     IN + A++YI SC + +  FG TP  E+H G  +C + +L++   L
Sbjct:   25 YTSGLPNHLSL--IFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINLENCGFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGD-DFSGVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRL 230          

HSP 2 Score: 41.5874 bits (96), Expect = 1.984e-12
Identity = 19/53 (35.85%), Postives = 32/53 (60.38%), Query Frame = 3
Query:  876 LAGWVCERQVKSGGLYGRPEKLPDVCYSWWVLSSLVMIDKVHWINKGQLVKFL 1034
            L  W+ ++Q+   G  GR  K PD CY++W+ +SL+MID+   I+   +  F+
Sbjct:  240 LTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFI 290          
The following BLAST results are available for this feature:
BLAST of DY263012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FNTB_YEAST4.545e-1627.27Protein farnesyltransferase subunit beta OS=Saccha... [more]
PGTB1_BOVIN4.561e-1628.77Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_HUMAN5.928e-1628.77Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_DICDI1.984e-1225.84Geranylgeranyl transferase type-1 subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CC11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263012 ID=DY263012; Name=DY263012; organism=Citrus clementina; type=EST; length=1205bp
CACTCTCTCCTTCTCCGGTCACCATCTTACTCTCACGGTCTCTCAACGTC
TCATTCTCTCAGCCTGACTGCCGTCAGCCCCACCTCCCCCAGTTTCCTCA
AGAACTCGACTTCCGCTAGCCCCAACCGTCGCTGGCTGCGTCTCCTCCTC
AGGCGCATTCCAACGTCAGTAAAGCTGAGGCCTTCCCTCAAATTTTGGCT
GAAGTGGCTAAAGAAAGTTCTCATTTGCTGTTGTGAAGCCGCTGCCGCTG
ACATCACTGCTGCTGCATTTGGAGATGGGAGAGCTGGCTGCAGATAAACA
TGTGAAATACATTATTTCAGTTGAGAAGAAAAAGGATAGTTTTGAATCTG
TGGTGATGGAACATTTGAGATTGAATGGGGCATATTGGGGGCTGACGACC
CTCGATATTTTAGGAAAGCTTGATGCTGTAGATGAAGAAGATGTTATTTC
ATGGATCTTGAAGTGTCAGGATGAATCTGGTGGTTTTGCTGGTAATATTG
GACATGATCCACATGTGTTGTATACCCTCAGCGCCGTGCAAGTTTTGGCC
CTTTTTGATAAGTTAGATATTCTTGATGCCGATAAGGTGTCAAATTATGT
TGCGGGGCTGCAAAATGGAGATGGCTCCTTTTCTGGAGACATATGGGGGG
AAGTGGATACACGGTTTTCTTATATCGCTATATGTTGTCTCTCAATACTA
CAGCGGCTGGATAAAATCAATGTGGATAAGGCCGTGGAGTACATAGTGAG
TTGCAAAAATCTGGATGGTGGATTTGGATGCACTCCTGGTGGAGAATCTC
ATTCAGGGCAAATCTTCTGTTGTGTTGGTGCACTTGCTATTGCCNGGGCT
CTGCATCATGTTGACAAGGACCTTCTTGGCTGGGTGGGTATGTGAGCGAC
AAGTCAAATCTGGAGGTCTTTATGGCCGCCCTGAGAAACTTCCTGATGTT
TGCTACTCCTGGTGGGTTCTTTCAAGCTTGGTCATGATTGACAAAGTCCA
CTGGATCAATAAGGGACAACTTGTTAAGTTTCTCTTGGAATGGTCGGGAA
TGGAAAATGGGAGAAATTTCAAAAAAACCTGAAAAAAGCGTTTAAAGTTT
TCTCAAAATAATTTTGAAAAAAACGGAGACTCCCCCTTTTTTGAAAATCC
AGAAAGGGAAAAAAAATTGATCCAACCCCAAGGCTTTTCGCCGGTGGAGG
GGTGA
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