DY263046

Overview
NameDY263046
Unique NameDY263046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: PEX7_MOUSE (Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.535e-13
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            K H +E Y + WS  + E  +VSGS D  + +WD +      V +++  +  HESV+    W       F SA  D  L IWD++T   +  + AH+ E+    +  YNE ++ T + D ++  +D+
Sbjct:  103 KEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPT------VGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDL 223          

HSP 2 Score: 31.187 bits (69), Expect = 5.535e-13
Identity = 14/42 (33.33%), Postives = 24/42 (57.14%), Query Frame = 3
Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVW 1001
            R +  P+  L  HT  + RV++ P+H +VLAS + +  +  W
Sbjct:  224 RNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFW 265          

HSP 3 Score: 68.9366 bits (167), Expect = 6.951e-11
Identity = 41/131 (31.30%), Postives = 60/131 (45.80%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAEDD 886
            +GH+   Y   WSP   G   S S D  + +WDV      K      V  AH++ +    W   NENL  +   DC L  WDLR   Q    +  H   +  + F+P++  VLA+ S D TV  ++ ++ D
Sbjct:  147 RGHESVIYSTIWSPHIPGCFASASGDQTLRIWDV------KTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPD 271          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: PEX7_CRIGR (Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus GN=PEX7 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.336e-13
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            K H +E Y + WS  + E  +VSGS D  + +WD +      V +++  +  HESV+    W       F SA  D  L IWD++T   +  + AH+ E+    +  YNE ++ T + D ++  +D+
Sbjct:  103 KEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPT------VGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDL 223          

HSP 2 Score: 31.187 bits (69), Expect = 9.336e-13
Identity = 14/42 (33.33%), Postives = 24/42 (57.14%), Query Frame = 3
Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVW 1001
            R +  P+  L  HT  + RV++ P+H +VLAS + +  +  W
Sbjct:  224 RNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFW 265          

HSP 3 Score: 68.9366 bits (167), Expect = 6.951e-11
Identity = 41/131 (31.30%), Postives = 60/131 (45.80%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAEDD 886
            +GH+   Y   WSP   G   S S D  + +WDV      K      V  AH++ +    W   NENL  +   DC L  WDLR   Q    +  H   +  + F+P++  VLA+ S D TV  ++ ++ D
Sbjct:  147 RGHESVIYSTIWSPHIPGCFASASGDQTLRIWDV------KTAGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPD 271          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: PEX7_HUMAN (Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.044e-12
Identity = 38/127 (29.92%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            K H +E Y + WS  + E  +VSGS D  + LWD +      V  ++  +  HES++    W       F SA  D  L IWD++    +  + AH+ E+    +  YNE +L T + D ++  +D+
Sbjct:  108 KEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWDPT------VGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDL 228          

HSP 2 Score: 31.187 bits (69), Expect = 2.044e-12
Identity = 14/42 (33.33%), Postives = 24/42 (57.14%), Query Frame = 3
Query:  876 RKMTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVW 1001
            R +  P+  L  HT  + RV++ P+H +VLAS + +  +  W
Sbjct:  229 RNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFW 270          

HSP 3 Score: 69.707 bits (169), Expect = 4.075e-11
Identity = 42/131 (32.06%), Postives = 61/131 (46.56%), Query Frame = 2
Query:  497 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAEDD 886
            +GH+   Y   WSP   G   S S D  + +WDV A     VI A      H++ +    W   NENL  +   DC L  WDLR   Q    +  H   +  + F+P++  VLA+ S D TV  ++ ++ D
Sbjct:  152 RGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPA------HQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPD 276          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RRB1_SCHPO (Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe GN=rrb1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.404e-12
Identity = 59/216 (27.31%), Postives = 96/216 (44.44%), Query Frame = 2
Query:  275 DSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQ-----KPNLVGTKTSSCEVYVFDCAKQAEK--------QQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDI 874
            D  S+     E+P++    I+ K    G  NR R   +     K +L+ +   + +V+++D A              + +  P   +  H  EGY L WSPF E  L+SG + N+I L   S             + +H + VED+ W    +N+F S   D    IWD+R  Q  +   V AH   +VN LS+N     +LAT + +   +++D+
Sbjct:  160 DDASDNSDVEEDPILEHKSISTK----GACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVMVSRKENSPLYTVNRHKTEGYALDWSPF-EYSLLSGDNANEIFLTKYSNGGWQTDSSP---FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDL 367          

HSP 2 Score: 27.7202 bits (60), Expect = 3.404e-12
Identity = 8/42 (19.05%), Postives = 21/42 (50.00%), Query Frame = 3
Query:  882 MTVPLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWEL 1007
            +  P+     H   ++ +EW P  ++V+     + ++ +W+L
Sbjct:  376 VATPVASFKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWDL 417          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: RRB1_YEAST (Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae GN=RRB1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.072e-11
Identity = 68/288 (23.61%), Postives = 126/288 (43.75%), Query Frame = 2
Query:   83 PFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMI------ADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMP----QKPNLVGTKTSSCEVYVFDCAKQAEK--------QQDDCDPDLRLKGHDK-EGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            P +Y+++ +  + WP LT+  +P        +   ++      T +S    N LM+      A  +L   +   +    +E+ V P +E  + I +    NR +  P     +  L  T + + +VY+++ A Q++          +    P   +K H   EGYGL WSP  K G L+SG    +I  +         V D      ++   +ED+ W      +F +AG D  + IWD R+ + +    VKA   +VN +S++    ++LA+   + T  ++D+ +
Sbjct:  115 PTVYEMLHNVNMPWPCLTLDVIPDTLGSERRNYPQSI-LLTTATQSSRKKENELMVLALSNLAKTLLKDDNEGEDDEEDDEDDVDPVIE-NENIPLRDTTNRLKVSPFAISNQEVLTATMSENGDVYIYNLAPQSKAFSTPGYQIPKSAKRPIHTVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQI--YFTQRHTSRWVTDKQPFTVSNNKSIEDIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWSDKIGYLLASGDDNGTWGVWDLRQ 398          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.754e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 2
Query:  275 DSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARC--MPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC-------DPDLRLK------GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            D E +   ++E    P++E+A      G +NR R   + ++P + G  +   +V VF   +  +   D         D   R+K      GH  EG+ L WSP   G L++G     I LW  +      V      +  H   VED+ W    + +F S   D  + IWD+R    +        AH+ +VN +S++   E  L +   D T+ ++D+ +
Sbjct:  123 DDEDDEDEEDEEERKPQLELAMVPHYGG-INRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNV--DQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWS-RREPFLLSGGDDGTLKVWDLRQ 338          

HSP 2 Score: 29.261 bits (64), Expect = 2.754e-11
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  891 PLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWEL 1007
            P+     H   V  VEW P    V A+S  + ++  W+L
Sbjct:  344 PVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDL 382          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.640e-11
Identity = 52/221 (23.53%), Postives = 92/221 (41.63%), Query Frame = 2
Query:  275 DSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARC--MPQKPNLVGTKTSSCEVYVFDCAKQAE-------------KQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            D E     ++E    P++E+A      G +NR R   + ++P + G  +   +V VF   +  +              +Q    P     GH  EG+ L WSP   G L++G     I LW  +      V      +  H   VED+ W    + +F S   D  + IWD+R   ++        AH+ +VN ++++ + E  L +   D  + ++D+ +
Sbjct:  124 DEEEEDDEEDEEERKPQLELAMVPHYGG-INRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFLRDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHV--DQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWS-HREPFLLSGGDDGALKVWDLRQ 339          

HSP 2 Score: 29.261 bits (64), Expect = 4.640e-11
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  891 PLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWEL 1007
            P+     H   V  VEW P    V A+S  + ++  W+L
Sbjct:  345 PVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDL 383          
BLAST of DY263046 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.817e-11
Identity = 54/221 (24.43%), Postives = 93/221 (42.08%), Query Frame = 2
Query:  275 DSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARC--MPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC-------DPDLRLK------GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDIAE 880
            D E +   ++E    P++E+A      G +NR R   + ++P + G  +   +V VF   +  +   D         D   R+K      GH  EG+ L WSP   G L++G     + LW  +      V      +  H   VED+ W    + +F S   D  + IWD+R    +        AH+ +VN +S++   E  L +   D  + ++D+ +
Sbjct:  124 DDEEDEDEEDEEEQKPQLELAMVPHYGG-INRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNV--DQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWS-RREPFLLSGGDDGALKVWDLRQ 339          

HSP 2 Score: 28.8758 bits (63), Expect = 7.817e-11
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  891 PLHILSSHTEEVFRVEWDPYHETVLASSADERRLMVWEL 1007
            P+     H   V  VEW P    V A+S  + ++  W+L
Sbjct:  345 PVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDL 383          
The following BLAST results are available for this feature:
BLAST of DY263046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
PEX7_MOUSE5.535e-1329.92Peroxisomal targeting signal 2 receptor OS=Mus mus... [more]
PEX7_CRIGR9.336e-1329.92Peroxisomal targeting signal 2 receptor OS=Cricetu... [more]
PEX7_HUMAN2.044e-1229.92Peroxisomal targeting signal 2 receptor OS=Homo sa... [more]
RRB1_SCHPO3.404e-1227.31Ribosome assembly protein rrb1 OS=Schizosaccharomy... [more]
RRB1_YEAST1.072e-1123.61Ribosome assembly protein RRB1 OS=Saccharomyces ce... [more]
GRWD1_RAT2.754e-1125.34Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
GRWD1_BOVIN4.640e-1123.53Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
GRWD1_MOUSE7.817e-1124.43Glutamate-rich WD repeat-containing protein 1 OS=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CF10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263046 ID=DY263046; Name=DY263046; organism=Citrus clementina; type=EST; length=1250bp
CGGACGAACAATGGCAGCAGAGGAGCAAGACGCGAGCTTGGATCAAGTGG
AGGAGGAGTTCACGGTATGGAAGAAGAACACGCCGTTTTTGTACGATCTG
ATTGTCTCTCACCCGTTAGAGTGGCCCTCGCTTACCGTCCACTGGGTCCC
ATCGCCTCCGCAACCCTACTCAGCGGACCCCACTTTCGCGGTGCACAAGT
TCGTGCTCGGGACCCACACCTCCGAGGATTTTCCCAACTTTCTCATGATC
GCCGATGCCGTGCTGCCCACCAAAGACTCGGAGTCTAACGTCGGCGGCAA
AAATGAAAATCCTGTCATCCCCAAGGTGGAGATAGCGCAGAAGATACGTG
TTGATGGGGAAGTGAATAGAGCACGGTGTATGCCACAGAAACCCAATCTT
GTTGGTACAAAGACTAGCAGTTGTGAGGTGTATGTGTTTGACTGTGCCAA
ACAGGCAGAAAAGCAGCAAGATGATTGTGATCCTGATCTGAGGTTGAAGG
GTCATGATAAAGAGGGTTATGGATTGTCTTGGAGTCCCTTTAAGGAAGGT
TATCTTGTGAGTGGTTCCCATGACAATAAGATTTGCTTGTGGGATGTGTC
TGCGTTGGCTCAAGACAAAGTGATTGATGCAATGCATGTCTATGAGGCTC
ATGAAAGTGTGGTTGAAGATGTGTCGTGGCATTTGAAGAATGAGAATTTA
TTTGGGTCTGCAGGCGATGATTGCCAACTGATGATCTGGGACTTGCGCAC
TAATCAAACTCAACAGCGTGTAAAAGCTCATGAGAAAGAGGTTAACTATC
TATCTTTTAATCCATACAATGAATGGGTTCTGGCGACTGCATCTTCAGAC
ACTACTGTTGCTTTGTTTGATATTGCGGAAGATGACTGTGCCGTTACACA
TTTTAAGTAGTCACACAGAAGAAGTGTTCCGGGTTGAATGGGATCCCTAT
CACGAAACCGTGCTGGCTTCTTCAGCTGATGAACGAAGGCTCATGGTTTG
GGAACTTTACCGGATTGGGGACAAGCAGTTGGAATTAAATGCCGAAGGAG
GGCCTTCCTGAACCCCTTTTCCTCCAGGGAGGTCACAGGGCCCCAAATAT
TAAAATTTCCCTTGAAACAAAAATGACCCGGGGGGGTTCTTTTCAGGTGG
GGCCCAACAAAAAAAACGTGTTCTGGGGCTTGGGGCAAATGGACAAAAAA
AACTTTTATCCGGAAGAACCAAAAAAAAAATTTTTCTCTCCCCCCCCCCC
back to top