DY263050

Overview
NameDY263050
Unique NameDY263050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1240
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263050 vs. ExPASy Swiss-Prot
Match: DAPL_BACLD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dapL PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.078e-11
Identity = 40/109 (36.70%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  363 VDWLRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAW--------VGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIG 665
            +D L ++RR +HQ PEL FQE++T   L   L       K+P  +  I  W         GT     +A RADMD L I+E   + + S    +MHACGHD H+ + +G
Sbjct:    3 LDELAAIRRDLHQIPELGFQEYKTQAYLLNHLA------KHPEGRIEIEKWRTGLFVKVKGTAPEKILAYRADMDGLSIREDTGYSFSSVHQDRMHACGHDFHMTIALG 105          
BLAST of DY263050 vs. ExPASy Swiss-Prot
Match: DAPL_LISIV (Putative N-acetyldiaminopimelate deacetylase OS=Listeria ivanovii GN=dapL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.020e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  378 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIG 665
            S+RR +HQ PE  ++E++T   L   ++++   Y +    +TG+   V GT     +  R D+DALPI E     ++SK AG MHACGHD H+++ +G
Sbjct:    8 SIRRELHQIPETGYKEWKTQAYLLDYINKLPSRYLEVKKWRTGLLVRVSGTSPTKTIGYRTDIDALPITEETGLAFESKHAGNMHACGHDLHMSIALG 105          
BLAST of DY263050 vs. ExPASy Swiss-Prot
Match: DAPL_BACP2 (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus pumilus (strain SAFR-032) GN=dapL PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.020e-11
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  372 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIG 665
            L S+RR +HQ PEL F+EF+T   L   LD       +    +TG+   V GT      A RADMD L I E   + ++S   GKMHACGHD H+ + +G
Sbjct:    7 LISIRRDLHQIPELGFKEFKTQAYLINHLDAYSKDRIEMETWRTGLFVKVKGTNPERVFAYRADMDGLSIPEDTGYPFQSVHEGKMHACGHDLHMTIALG 106          
BLAST of DY263050 vs. ExPASy Swiss-Prot
Match: DAPL_BACHD (Putative N-acetyldiaminopimelate deacetylase OS=Bacillus halodurans GN=dapL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.250e-11
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  372 LRSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYPLAKTGIRAWVG-TGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIG 665
            L  VRR +H+ PEL F+E++T   L   +  +   + +    KTGI   VG   G   VA RADMD LPI E     + S+  G+MHACGHD H+ +  G
Sbjct:    5 LIDVRRALHRIPELGFEEYKTQTYLLDLIQSLPQDFLEVKTWKTGILVRVGGRKGEKTVAYRADMDGLPITEETGLPFVSQHEGRMHACGHDLHMTIAFG 104          
The following BLAST results are available for this feature:
BLAST of DY263050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
DAPL_BACLD3.078e-1136.70Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_LISIV4.020e-1137.76Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_BACP24.020e-1142.00Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]
DAPL_BACHD5.250e-1141.00Putative N-acetyldiaminopimelate deacetylase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263050 ID=DY263050; Name=DY263050; organism=Citrus clementina; type=EST; length=1240bp
ATTATTTCTCTCTCTCTCTGGGTGTGTTCCTTCTCCATTTGTTTTTTTTC
ACTCTCATCACTTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGC
GTTTAAAATCTTGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTG
AATCCTTAACGCCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCG
TTGGGCTCATCAACAATAGCAGCAACAACGCCGGCTTGGAAACCCGACGG
CGGCAGCGTCAAGAACCGATCGTCGACGTCACGGAAGCCGTTTTCGAGCT
GCGGAGTGTGGAGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGG
CGGCCGGAGACGGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCA
GAATCCGGAGCTTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGG
CCGAGTTGGATCGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACA
GGTATCCGGGCATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAG
AGCTGACATGGATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACA
AAAGCAAAGTGGCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTT
GCCATGCTCATCGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTT
AAAGGTTTGAAAAGAAAAAAAAAATTATTAAAAAAAGAAGAAGATAAATG
CCCTTCTTTGTTTGAATTGATGGTTTTTTTTTTTTAACATCATTTTTGTT
TAGTACTTCAGAAGCTTTTTGCACATTGGTTTTCTCTCTGCATGGATGTC
CAATTTGGAGATGAATTATTGCACTTTATGAAATGAAACTAGGGGTGGTG
GCATTAACGTAACTGTTATAGGCAATTGAAAAAGAATAATGTGTGTGTGT
GTAGGAACGGTGGCTTTTCTTTTTTGTTAAAGAACTGAAATTTGTAGGGG
CAGAAAATGCTTCTCAAAAATGTCCGGGGGGGGAAAAAAAAAATGGGGCC
TCTAAATTAAATTTTCATTTTTTAGCCCGCAGGGGGGCCTTCCAAAAAAA
AGGGTTCTTTTTGGTTTGCCAACCCAAAACCTTTCTGGGTCTTTTTTTCA
AATTGCCTTTCCCCTAAAGGGGGGAAAAAGCTTAAAATCCCCATATTGAA
AAAAAGGGGGGGGGGGGTTTTAAATATTTTTTTTTTTTTT
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