DY263054

Overview
NameDY263054
Unique NameDY263054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.606e-26
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+++G  +   +  L+VA+++YL+  DP+  IYLYINS G         G    G AIYDT+  ++ +V T+ +G A  M   LLA GTKGKR  +PHA+IMI QP   + G  PA+D+ I+AKE +  +++L  LL  HTG   E + +  +     T E+A+
Sbjct:   26 RIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAK 179          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.270e-25
Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+++G  +   +  L+VA+++YL+  DP+  IYLYINS G         G    G AIYDT+  ++ +V T+ +G A  M   LLA G KGKR  +PHA+IMI QP   + G  PA+D+ I+AKE +  +++L  LL  HTG   E + +  +     T E+A+
Sbjct:   26 RIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAK 179          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.270e-25
Identity = 62/154 (40.26%), Postives = 96/154 (62.34%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLE 901
            RIVY+G P+   V EL++A+L+YL+  D   PI +YINS G         G E+  FA+YDT+  ++  + T+ +G A G + LL+AAGTKG+R  +P+++I++ QP   + G   A+D+ IRA+E +  + TL +LL  HTG + E + K  E
Sbjct:   37 RIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA-------GFETSAFAVYDTMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARG--QATDINIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTE 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.271e-25
Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            R ++IG P+   V  LV+A++++L+  DP+  I+LYINS G         G+ + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A+IMI QP     G   A+D+ I A+E +  RD L +LL +HTG  +E + +  E     +  +A+
Sbjct:   29 RTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG---------GVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQG--QATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAK 182          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.515e-25
Identity = 59/154 (38.31%), Postives = 96/154 (62.34%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLE 901
            RI+++   +   +  L++A++++L+  DP+  I+LYINS G         G+ + G +IYDT+  +KCEV T+ +G +  MA L+LA+G KGKRF +P+A+IMI QP   S G   A+D+ I   E +  +  +++LL +HTG S E ++K  E
Sbjct:   28 RIIFVTGKIEDYMANLIIAQMIFLESEDPEKDIFLYINSPG---------GVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARIMIHQPLGGSQG--QATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTE 170          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.243e-24
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRVSGVVRELFRAEV 994
            RI+++G  +   V  L++A++++L+  DP+  I+LYINS G         G+ + G AIYDT+  ++C V T+ VG A  M  +LLAAG +GKRF +PHA+IMI QP     G   A+D+ I A+E +  R+TL  +L  HTG + E +    E       E+A+         G+V ++ + +V
Sbjct:   28 RIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG---------GVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQPWGGFQG--QATDINIHAQEILRLRETLNGVLASHTGQTLEKIATDTERDFFMGSEEAKKY-------GIVDDIVKRKV 194          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.623e-24
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRVSGVVRELFRAEVAPPK 1006
            RI+++G  +   V  L+VA+L++L+  DP+  I  YINS G         G+ + G A+YDT+  +K +V TV +G A  M  LLLAAG KGKRF +P+++IMI QP   + G   ASD+ I+A E +  ++ L  +L +HTG + + +++  +     + ++A+       V     EL +AE A  K
Sbjct:   28 RIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPG---------GVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQG--QASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVVASRDELEKAEAAKEK 205          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus GN=clpP PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.120e-24
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RIV +G P+   V  L+VA+L++L+  DP   IYLYINS G         G  + G AIYDT+  +K +V T+ +G A  M  +LLAAG  GKR+ +PH++IMI QP     G   A+D++I A+E    ++ L+ +L +HTG  ++ +   +E     +  +A++
Sbjct:   35 RIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQPLGGIQG--QATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKD 189          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOLS (ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.768e-24
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RIV++G  +   V +LV+A+L++L+  DP   I+LYINS G         G+ + G AI+DT+  +K  V T+ +G A  M  +LL AG KGKRF +PHA+IMI QP   S G   A+D++I+A+E +  +  L +LL   +G   E + +  E     + E+ARN
Sbjct:   27 RIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGSRG--QATDIMIQAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARN 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.768e-24
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G P+   V  ++VA+L++L+  DP   I LYINS G         G  + G AIYDT+  +KC V T+ VG A  M  LLL AG KGKR+ +P+++IMI QP   + G   A+D+ I+AKE +  R  +  L+ +HTG++ E + K  E     + E AR
Sbjct:   27 RIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPG---------GSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQG--QATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDAR 180          
The following BLAST results are available for this feature:
BLAST of DY263054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_SYNJB8.606e-2639.39ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA3.270e-2538.79ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_GLOVI3.270e-2540.26ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_CARHZ4.271e-2539.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WIGBR9.515e-2538.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD1.243e-2436.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH1.623e-2435.45ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AQUAE2.120e-2437.35ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOLS2.768e-2439.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXD2.768e-2440.00ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263054 ID=DY263054; Name=DY263054; organism=Citrus clementina; type=EST; length=1362bp
ATCAAAGTTCAAAACTACAAAAGCACAATCAAAACAGAACTCACCCATTT
AATTAGAAATAAACAAAAAATAAAAAGCTATGTCGACGAGTTTCCTGCAA
GCGCCCATGGCGGCTTTAGTCCCGTCAACTTCAGTTCATTCTCTTAGAAG
CAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATC
CCATGCCAGCACACATTAATCCTAACGACCCCTTTCTTTCTAAGCTCGCC
GCTGCCGCGGCAGCCTCCCCGGAAGCGTTTGTTAATCGTCCTTCCAATTC
CGGTACGCTGCCGTATTTGGATATCTACGATTCTCCCACTCTTATGGCCT
CCCCTGCCCAAGTGGAAAGATCGGCTTCATACAATGAACATAGGCCAGAT
ACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATA
CATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAC
TGATGTACTTGCAGTGGATGGATCCCAAGGCACCTATATATCTTTATATT
AATTCCACGGGTACAACTCGTGATGATGGTGAATCGGTTGGGATGGAGAG
TGAAGGCTTTGCCATTTATGATACATTGATGCAAATGAAGTGTGAGGTAC
ATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCTTGTCTACTACTTGCT
GCTGGAACTAAAGGAAAACGATTTATGATGCCTCATGCCAAAATCATGAT
TCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGCCCGCTAGTGATGTTC
TTATTCGTGCAAAAGAGGCAATGGTAAACAGAGACACACTTGTAAAACTT
CTGGGCCAGCACACTGGAAATTCAGAGGAGTTTGTGACTAAAACATTAGA
AGAACATATCATATGGACTCTAGAAAAAGCCAGGAATTTGGAGTCATCGA
CAAGGGTCTCTGGCGTGGTCAGGGAACTATTTAGGGCGGAAGTTGCTCCT
CCCAAGGATTGGGATAAGAATGGCTGGGATTAAAGTTGGAAAATAATTTT
GATTTTAATTTCTTCCTGGGAAACTTATCGCAGGGAGAAAGTTTGAAAAT
CTTAAAGGCTCTCCGAAAAATCACCCAGGAATTTTTTGAAGCTTATTTAT
CTTTAAAACAATTAACTCCTAAGGGAAAATTCAAAAAACGGCCCGAAAAA
AAAGGGACCCCAATGAAAGCCAAATCAAAAAAAGGGAAGTTTAAAAATAA
GGGAATTTTGGGATATATCTTTTGGAGGGTTTTTCCCCTTTTTTTATTTG
GAATTATAAATAAATATTATTTGTGGTTACCAACAAAAAAGAAGGGGGGT
TCCTTTTAAAAA
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