DY263054

Overview
NameDY263054
Unique NameDY263054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAAM (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAAE (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Newman) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAAC (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain COL) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAAB (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAA9 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH9) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAA8 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain NCTC 8325) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + K  +     T E+A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAK 181
[Close]
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 60/165 (36.36%), Postives = 96/165 (58.18%), Query Frame = 2 
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI++IG  +   +   V+A++++L+  DP   I+LYINS G         G    G AIYDT+  ++ +V T+ VG A  M  +LLAAG +GKRF +P+++IM+ QP   + G   A+DV I A+E M  ++ L ++L  HTG   E ++K  +     + E+A+
Sbjct:   28 RIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPG---------GHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQG--QAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQ 181
The following BLAST results are available for this feature:
BLAST of DY263054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAAM3.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAE3.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAC3.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAB3.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA93.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA83.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA33.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA23.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA13.998e-2337.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ3.998e-2336.36ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CG06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263054 ID=DY263054; Name=DY263054; organism=Citrus clementina; type=EST; length=1362bp
ATCAAAGTTCAAAACTACAAAAGCACAATCAAAACAGAACTCACCCATTT
AATTAGAAATAAACAAAAAATAAAAAGCTATGTCGACGAGTTTCCTGCAA
GCGCCCATGGCGGCTTTAGTCCCGTCAACTTCAGTTCATTCTCTTAGAAG
CAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATC
CCATGCCAGCACACATTAATCCTAACGACCCCTTTCTTTCTAAGCTCGCC
GCTGCCGCGGCAGCCTCCCCGGAAGCGTTTGTTAATCGTCCTTCCAATTC
CGGTACGCTGCCGTATTTGGATATCTACGATTCTCCCACTCTTATGGCCT
CCCCTGCCCAAGTGGAAAGATCGGCTTCATACAATGAACATAGGCCAGAT
ACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATA
CATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAC
TGATGTACTTGCAGTGGATGGATCCCAAGGCACCTATATATCTTTATATT
AATTCCACGGGTACAACTCGTGATGATGGTGAATCGGTTGGGATGGAGAG
TGAAGGCTTTGCCATTTATGATACATTGATGCAAATGAAGTGTGAGGTAC
ATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCTTGTCTACTACTTGCT
GCTGGAACTAAAGGAAAACGATTTATGATGCCTCATGCCAAAATCATGAT
TCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGCCCGCTAGTGATGTTC
TTATTCGTGCAAAAGAGGCAATGGTAAACAGAGACACACTTGTAAAACTT
CTGGGCCAGCACACTGGAAATTCAGAGGAGTTTGTGACTAAAACATTAGA
AGAACATATCATATGGACTCTAGAAAAAGCCAGGAATTTGGAGTCATCGA
CAAGGGTCTCTGGCGTGGTCAGGGAACTATTTAGGGCGGAAGTTGCTCCT
CCCAAGGATTGGGATAAGAATGGCTGGGATTAAAGTTGGAAAATAATTTT
GATTTTAATTTCTTCCTGGGAAACTTATCGCAGGGAGAAAGTTTGAAAAT
CTTAAAGGCTCTCCGAAAAATCACCCAGGAATTTTTTGAAGCTTATTTAT
CTTTAAAACAATTAACTCCTAAGGGAAAATTCAAAAAACGGCCCGAAAAA
AAAGGGACCCCAATGAAAGCCAAATCAAAAAAAGGGAAGTTTAAAAATAA
GGGAATTTTGGGATATATCTTTTGGAGGGTTTTTCCCCTTTTTTTATTTG
GAATTATAAATAAATATTATTTGTGGTTACCAACAAAAAAGAAGGGGGGT
TCCTTTTAAAAA
back to top