DY263054

Overview
NameDY263054
Unique NameDY263054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.519e-22
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL-PASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RI+++G P+   V   ++A+L++L+  DP+  I LYINS G         G  S G AIYDT+  +K ++ T A+G A  M   LLAAGTKGKRF +P+ +I++ QP +   GL   ASDV I A+E +  +  L ++L +HTG   + + +  +   I   E+A
Sbjct:   34 RIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPG---------GSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAV--GGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEA 187          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.519e-22
Identity = 62/173 (35.84%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRV 958
            RI+++G P+   V   +V++L++L   DP+  I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P++++MI QP   + G   A+++ I AK  +  RD L ++L ++TG   E + +  +     T +KA+      RV
Sbjct:   28 RIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRV 189          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNJB (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. GN=clpP1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.519e-22
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS-SGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI++IG P+  ++   +V  ++YL   DP+  I +YINS G         G  + G AIYDT+  +K ++ TV VG A  M   LLAAGTKGKRF +PH++IM+ QP L +  G   ASD+ IRA+E +  +  + ++L Q TG   E + + +E     +  +A+
Sbjct:   31 RILFIGEPIDDSLANTIVGVMLYLNSQDPQKDIVMYINSPG---------GSVTAGMAIYDTMNHIKPDIVTVCVGQAASMGAFLLAAGTKGKRFALPHSRIMLHQPSLGTIQG--QASDIEIRARETLRVKRRMNEILAQTTGQPLEKIERDVERDFYLSATEAQ 185          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_WOLTR (ATP-dependent Clp protease proteolytic subunit OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.984e-22
Identity = 62/173 (35.84%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRV 958
            RI+++  P+   +  ++VA+L++L+  +P   IY+YINS G         G+ + G +IYDT+  +K +V T+ +G A  M  LLLAAGT+GKR+ +PH++IMI QP     G   A+D+ I A E +  +  L ++  +HTGNS + +   +E       E+AR +    RV
Sbjct:   28 RIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPG---------GVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQG--QATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIGLIDRV 189          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.984e-22
Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RI+++G  +   +  L+VA+L++L   DP+  IYLYINS G         G  + G  I+DT+  ++ +V T+  G A  M   LL+AGTKGKR  +PH++IMI QP   + G   A+D+ I+A+E + ++  L   L +HTG   E + +  E     + ++AR+
Sbjct:   27 RIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPG---------GSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQG--QATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARD 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.591e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRV 958
            RI+ +G P+   V   +V++L++L   DP+  I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IMI QP   + G   A+++ I AK  +  RD L ++L ++TG   E + +  +     T +KA+      RV
Sbjct:   28 RIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRV 189          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.591e-22
Identity = 62/164 (37.80%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RIV++G P+   V   +V++L++L   DP   I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IMI QP   + G   A+++ I AK  +  RD L ++L ++TG   E + +  +     T +KA
Sbjct:   28 RIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKA 180          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_EUBE2 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=clpP PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.591e-22
Identity = 59/164 (35.98%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RI+++G  +      LVVA++++L+  DP   I+ YINS G         G  S GFAIYDT+  +KC+V T+ +G A  M   LL+ G KGKR  +P+A+IMI QP   + G    +++ I A+  +  R+ L ++L  +TG S E +++  E     T ++A
Sbjct:   28 RIIFLGEEVTDVSANLVVAQMLFLEAEDPSKDIHFYINSPG---------GSVSAGFAIYDTMQYIKCDVSTICIGMAASMGAFLLSGGAKGKRLALPNAEIMIHQPSGGARG--QETEIRIVAENILKTRNKLNEILAANTGKSVEEISRDTERDNYMTAQEA 180          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_EUBR3 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.384e-22
Identity = 59/164 (35.98%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RI+++G  +      LVVA+L++L+  DP   I+LYINS G         GM + G AIYDT+  +KC+V T+ +G A  M   LLA G KGKR+ +P+A+IMI QP   + G   A+++ I A+  +  +  L ++L  +TG   E +    E     + ++A
Sbjct:   28 RIIFLGEEVNETTASLVVAQLLFLESEDPNKDIHLYINSPG---------GMVTAGLAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKG--QATEIQIAAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEA 180          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_ANOFW (ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.384e-22
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRV 958
            RI+ +G P+   V   +V++L++L   DP+  I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IMI QP     G   A+++ I AK  +  RD L ++L ++TG   E + +  +     T EKA+      RV
Sbjct:   28 RIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPG---------GSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQG--QATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRV 189          
The following BLAST results are available for this feature:
BLAST of DY263054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_RUBXD1.519e-2238.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOTN1.519e-2235.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNJB1.519e-2237.95ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WOLTR1.984e-2235.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_ANAVT1.984e-2235.54ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_GEOSW2.591e-2236.42ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOKA2.591e-2237.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBE22.591e-2235.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBR33.384e-2235.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANOFW3.384e-2236.99ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CG06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263054 ID=DY263054; Name=DY263054; organism=Citrus clementina; type=EST; length=1362bp
ATCAAAGTTCAAAACTACAAAAGCACAATCAAAACAGAACTCACCCATTT
AATTAGAAATAAACAAAAAATAAAAAGCTATGTCGACGAGTTTCCTGCAA
GCGCCCATGGCGGCTTTAGTCCCGTCAACTTCAGTTCATTCTCTTAGAAG
CAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATC
CCATGCCAGCACACATTAATCCTAACGACCCCTTTCTTTCTAAGCTCGCC
GCTGCCGCGGCAGCCTCCCCGGAAGCGTTTGTTAATCGTCCTTCCAATTC
CGGTACGCTGCCGTATTTGGATATCTACGATTCTCCCACTCTTATGGCCT
CCCCTGCCCAAGTGGAAAGATCGGCTTCATACAATGAACATAGGCCAGAT
ACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATA
CATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAC
TGATGTACTTGCAGTGGATGGATCCCAAGGCACCTATATATCTTTATATT
AATTCCACGGGTACAACTCGTGATGATGGTGAATCGGTTGGGATGGAGAG
TGAAGGCTTTGCCATTTATGATACATTGATGCAAATGAAGTGTGAGGTAC
ATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCTTGTCTACTACTTGCT
GCTGGAACTAAAGGAAAACGATTTATGATGCCTCATGCCAAAATCATGAT
TCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGCCCGCTAGTGATGTTC
TTATTCGTGCAAAAGAGGCAATGGTAAACAGAGACACACTTGTAAAACTT
CTGGGCCAGCACACTGGAAATTCAGAGGAGTTTGTGACTAAAACATTAGA
AGAACATATCATATGGACTCTAGAAAAAGCCAGGAATTTGGAGTCATCGA
CAAGGGTCTCTGGCGTGGTCAGGGAACTATTTAGGGCGGAAGTTGCTCCT
CCCAAGGATTGGGATAAGAATGGCTGGGATTAAAGTTGGAAAATAATTTT
GATTTTAATTTCTTCCTGGGAAACTTATCGCAGGGAGAAAGTTTGAAAAT
CTTAAAGGCTCTCCGAAAAATCACCCAGGAATTTTTTGAAGCTTATTTAT
CTTTAAAACAATTAACTCCTAAGGGAAAATTCAAAAAACGGCCCGAAAAA
AAAGGGACCCCAATGAAAGCCAAATCAAAAAAAGGGAAGTTTAAAAATAA
GGGAATTTTGGGATATATCTTTTGGAGGGTTTTTCCCCTTTTTTTATTTG
GAATTATAAATAAATATTATTTGTGGTTACCAACAAAAAAGAAGGGGGGT
TCCTTTTAAAAA
back to top