DY263054

Overview
NameDY263054
Unique NameDY263054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_TROW8 (ATP-dependent Clp protease proteolytic subunit 2 OS=Tropheryma whipplei (strain TW08/27) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.384e-22
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RIV++G+ +  A  + V+A+L+ L+  D +  I +YINS G         G  +   AIYDT+  ++ ++ TV +G A   A ++L+AGT GKR  +P+A+I+I QP + SSG   ASD+ I+A+E M  R+ L K L QH+  S + V+K ++   I + E+A
Sbjct:   33 RIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG---------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQA 187          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP1_TROWT (ATP-dependent Clp protease proteolytic subunit 1 OS=Tropheryma whipplei (strain Twist) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.384e-22
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RIV++G+ +  A  + V+A+L+ L+  D +  I +YINS G         G  +   AIYDT+  ++ ++ TV +G A   A ++L+AGT GKR  +P+A+I+I QP + SSG   ASD+ I+A+E M  R+ L K L QH+  S + V+K ++   I + E+A
Sbjct:   33 RIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPG---------GSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQA 187          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOMG (ATP-dependent Clp protease proteolytic subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 61/166 (36.75%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RI+++G P+   V  LV+A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M  LLL+ G KGKRF + H++IMI QP     G   A+D+ I A+E +  +  L +++ +++G + E V    E     + E+A++
Sbjct:   27 RIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMIHQPLGGFQG--QATDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFMSGEEAKS 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 62/165 (37.58%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+++G  +      LVVA+L++L+  DP   IYLYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LL AG KGKRF +P+++IMI QP     G   A+D+ I A   +  +D L  +L + TG   E + K +E       E+A+
Sbjct:   28 RIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPG---------GSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQG--QATDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAK 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLE 901
            RI+++G  +   V  L++A+L++L+  DP+  IY+YINS G         G  S G  IYDT+  ++ E+ TV VG A  M   LLA+G KGKR  +PH++IMI QP   + G    +D++I+A+E    R  L +LL +HTG   E V +  E
Sbjct:   53 RIIFLGTGIDEHVAGLIMAQLIFLESEDPERDIYIYINSPG---------GSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQPSGGAQG--QETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSE 195          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 62/164 (37.80%), Postives = 91/164 (55.49%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RIV +   +   +  L+VA+L++L+  DP   IYLYINS G         G  + GFAIYDT+  +K +V T+ VG A  M   LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  +  + ++L + TG   E + +  E     T E+A
Sbjct:   29 RIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG---------GSVTAGFAIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRG--QATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAEEA 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_BDEBA (ATP-dependent Clp protease proteolytic subunit OS=Bdellovibrio bacteriovorus GN=clpP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL-PASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLE 901
            RI+ +G  +   V   ++A++++L+  +P+ PI+LYINS G         G  S G AIYD +  +KC+V T  +G A  M  LLL AGTKG R+ +P+ +IMI QP L   GL    +D+ I AKE +  ++ L ++   HTG   + +   +E
Sbjct:   39 RIIILGTAVTDEVANSIIAQMLFLEVDNPEKPIHLYINSPG---------GSVSAGLAIYDFMQFVKCDVATYCMGMAASMGSLLLTAGTKGMRYSLPNTRIMIHQPLLSGGGLSGQVTDIEIHAKELVKTKEKLTRIYETHTGRDYDTLRAAME 184          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP5_STRAW (ATP-dependent Clp protease proteolytic subunit 5 OS=Streptomyces avermitilis GN=clpP5 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.420e-22
Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLE 901
            RIV++G P+       V+A+ M+L+ + P   I LYINS G         G  S   A+YDT+  + C+V T+ +G A   A +LLA GT GKR  +P A+++I QP LP+     ASD++I+A E    R+ L +LL +HTG S E V   +E
Sbjct:   34 RIVFLGTPIDDTSANDVMAQFMHLEHLAPDRDISLYINSPG---------GSFSAMTAVYDTMQFVSCDVETICLGQAASAAAVLLAGGTPGKRLALPGARVLIHQPSLPAPVQGQASDLVIQAAELARTREQLEELLVRHTGQSPERVAADIE 178          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.772e-22
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RIV++G  +   V  LVVA+L++L+  DP   I LYINS G         G  + G AIYDT+  +K +V T+ VG A  MA +LLA+GTKGKRF +P+A+IM+ QP   + G  P  DV I  KE +  ++ +  +L + TG   + + K  +     +  +A
Sbjct:   32 RIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPG---------GSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIMLHQPLGGAEG--PVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEA 184          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.772e-22
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + GFAIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A   +  R+ L ++L + TG S E + +  +     T  +A+
Sbjct:   28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAK 181          
The following BLAST results are available for this feature:
BLAST of DY263054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_TROW83.384e-2237.80ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TROWT3.384e-2237.80ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_GEOMG4.420e-2236.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN4.420e-2237.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH4.420e-2239.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS84.420e-2237.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BDEBA4.420e-2236.77ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP5_STRAW4.420e-2239.61ATP-dependent Clp protease proteolytic subunit 5 O... [more]
CLPP_THELT5.772e-2238.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES5.772e-2236.36ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CG06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263054 ID=DY263054; Name=DY263054; organism=Citrus clementina; type=EST; length=1362bp
ATCAAAGTTCAAAACTACAAAAGCACAATCAAAACAGAACTCACCCATTT
AATTAGAAATAAACAAAAAATAAAAAGCTATGTCGACGAGTTTCCTGCAA
GCGCCCATGGCGGCTTTAGTCCCGTCAACTTCAGTTCATTCTCTTAGAAG
CAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATC
CCATGCCAGCACACATTAATCCTAACGACCCCTTTCTTTCTAAGCTCGCC
GCTGCCGCGGCAGCCTCCCCGGAAGCGTTTGTTAATCGTCCTTCCAATTC
CGGTACGCTGCCGTATTTGGATATCTACGATTCTCCCACTCTTATGGCCT
CCCCTGCCCAAGTGGAAAGATCGGCTTCATACAATGAACATAGGCCAGAT
ACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATA
CATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAC
TGATGTACTTGCAGTGGATGGATCCCAAGGCACCTATATATCTTTATATT
AATTCCACGGGTACAACTCGTGATGATGGTGAATCGGTTGGGATGGAGAG
TGAAGGCTTTGCCATTTATGATACATTGATGCAAATGAAGTGTGAGGTAC
ATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCTTGTCTACTACTTGCT
GCTGGAACTAAAGGAAAACGATTTATGATGCCTCATGCCAAAATCATGAT
TCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGCCCGCTAGTGATGTTC
TTATTCGTGCAAAAGAGGCAATGGTAAACAGAGACACACTTGTAAAACTT
CTGGGCCAGCACACTGGAAATTCAGAGGAGTTTGTGACTAAAACATTAGA
AGAACATATCATATGGACTCTAGAAAAAGCCAGGAATTTGGAGTCATCGA
CAAGGGTCTCTGGCGTGGTCAGGGAACTATTTAGGGCGGAAGTTGCTCCT
CCCAAGGATTGGGATAAGAATGGCTGGGATTAAAGTTGGAAAATAATTTT
GATTTTAATTTCTTCCTGGGAAACTTATCGCAGGGAGAAAGTTTGAAAAT
CTTAAAGGCTCTCCGAAAAATCACCCAGGAATTTTTTGAAGCTTATTTAT
CTTTAAAACAATTAACTCCTAAGGGAAAATTCAAAAAACGGCCCGAAAAA
AAAGGGACCCCAATGAAAGCCAAATCAAAAAAAGGGAAGTTTAAAAATAA
GGGAATTTTGGGATATATCTTTTGGAGGGTTTTTCCCCTTTTTTTATTTG
GAATTATAAATAAATATTATTTGTGGTTACCAACAAAAAAGAAGGGGGGT
TCCTTTTAAAAA
back to top