DY263055

Overview
NameDY263055
Unique NameDY263055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1292
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMTB_ECOLI (Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.686e-34
Identity = 86/243 (35.39%), Postives = 127/243 (52.26%), Query Frame = 3
Query:  162 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG--SIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 884
            V FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G+++G   +  VTM+        L  VDD   VF  H V           FA   L
Sbjct:  123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML------KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 359          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMTB_ECO57 (Ammonia channel OS=Escherichia coli O157:H7 GN=amtB PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.686e-34
Identity = 86/243 (35.39%), Postives = 127/243 (52.26%), Query Frame = 3
Query:  162 VYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG--SIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 884
            V FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+   A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +    A+++G+++G   +  VTM+        L  VDD   VF  H V           FA   L
Sbjct:  123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML------KRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 359          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: NRGA_BACSU (Ammonium transporter nrgA OS=Bacillus subtilis GN=nrgA PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.781e-33
Identity = 80/222 (36.04%), Postives = 119/222 (53.60%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            FQ TFA +T  +++G+   RM   A++ F  LW    YT  A  +WGGG++ Q G +D++GG V+H+SSG+AGL  A  +G R   D     P+N+               GFN G+       +  A +NTN AAA  +  W  ++ I   KP+++GAV G + GLV ITP AG V  +A+I++GI+ G++ +  +  L KK       DD L  F  H +
Sbjct:  100 FQMTFAVLTTAIISGAFAERMRFGAFLLFSVLWASLVYTPVAHWVWGGGWIGQLGALDFAGGNVVHISSGVAGLVLAIVLGKR--KDGTASSPHNLIYTFLGGALIWFGWFGFNVGSALTLDGVAMYAFINTNTAAAAGIAGWILVEWIINKKPTMLGAVSGAIAGLVAITPAAGFVTPFASIIIGIIGGAVCFWGVFSLKKKFG----YDDALDAFGLHGI 315          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT41_ORYSJ (Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.252e-28
Identity = 70/144 (48.61%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  405 VGPRLKSDKERFPPNNVXXXXXXXXXXXXXX-SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            VGPR + D+E FPPNNV               +GFNGGAPYAA++ +S+ ++NT++  ATSLLVW  LD   FG+ SVI AVQGM+TGLVC+TP A LV                      LHK+  LL  VDDTLAV HTH V
Sbjct:   43 VGPRTEKDREAFPPNNVLLTLAGAGLLLWMGWTGFNGGAPYAANVDASVTVVNTHLCTATSLLVWLLLDSFVFGRLSVISAVQGMITGLVCVTPAARLV----------------------LHKRSRLLARVDDTLAVLHTHGV 164          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT1_DICDI (Ammonium transporter 1 OS=Dictyostelium discoideum GN=amtA PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.018e-28
Identity = 73/235 (31.06%), Postives = 122/235 (51.91%), Query Frame = 3
Query:  138 PFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQW-GVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDK--ERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            P    A   +F   FA IT +L+ G+   R+  +A++A    W +  +   A  +WGGG+L+++ GV+D++GG VIH S+G++ L  A +VG R   +K    FPP+N+               GFN G+  AA   ++ A+ +T +  + S +VW  L     GKP+ +  + G++ GL  ITP +G + S  +I +GI  G   + ++++L  K      +DD L V   H +
Sbjct:  126 PNIPAAAYAFFMMMFANITPLLMTGAFAERVKFKAFIALTVAWEIIVFYPVAHWIWGGGWLHKYFGVLDFAGGIVIHTSAGVSALVIALYVGRRKDFEKYGGEFPPSNLPLATIGAALLWMGWFGFNAGSALAAGNIATSAVASTQIGGSFSAIVWIILSAA-KGKPNTVSVINGVIAGLAGITPASGYINSQYSIGLGICLGLASYYSVVLLKHKL----HIDDALDVSSVHGL 355          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT1_SCHPO (Ammonium transporter 1 OS=Schizosaccharomyces pombe GN=amt1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.248e-27
Identity = 78/223 (34.98%), Postives = 114/223 (51.12%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            FQ  FAAIT  L  G+   R  +   M F+ LW    Y   AF  W   G+L + G  D++GG  +H+SSG+A L  +  +G R      ++ P+NV               GFNGG+  AA++   +A++ T++AA+   +VW  +D       SV+G  +G + GLV ITPG+G V  WAA+V+G L G++       L K    +  VDD L +F  H V
Sbjct:  128 FQGMFAAITPALAIGAAADRGRMFPCMVFMFLWTSIVYDPIAFWTWNPNGWLNKLGSYDFAGGSPVHISSGMAALAYSIVIGKRCDHGTTKYRPHNVPHVVLGTVFLWFGWFGFNGGSSAAANMRGVMAVVVTHLAASVGGIVWCVIDFAKNRHWSVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGAL-GAVFCYAATYLKK----IIRVDDALDIFAEHGV 345          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT2_SCHPO (Ammonium transporter 2 OS=Schizosaccharomyces pombe GN=amt2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.548e-27
Identity = 83/260 (31.92%), Postives = 124/260 (47.69%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIF-FGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSG-SIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPQEGILRGEKR 938
            FQ  FAAITV L  G+   R  I   +    +WL   Y   A  +W   G+ +++GV D++GG  + V SG A L     +G R K  +E+F P++V               GFNGG+ Y +++ +++AI NTN+A A + LVW   D IF   K S IG   G++ GLV  TP AG V   A++ +G ++G    W   +  H +      +DD + +F  H V           FA   +  +      +GI  GE +
Sbjct:  143 FQGMFAAITVALFTGAAAERGRIGPMLIITFVWLTVVYCPIACWIWNPNGWAFKFGVYDFAGGGPVEVGSGFAALAYTVCLGRRSKFVEEQFRPHSVLNVVLGTSLLWFGWLGFNGGSAYGSNLRAAMAITNTNLAGAVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAGFVSPHASLAIGAITGLCCNWAIKLKSHMR------IDDAMDIFAIHGVAGFVGTFLNGLFAVDYIAAM------DGIYVGENK 390          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT_MYCTU (Probable ammonia channel OS=Mycobacterium tuberculosis GN=amt PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.741e-24
Identity = 80/302 (26.49%), Postives = 129/302 (42.72%), Query Frame = 3
Query:    6 MAFGDQLLPFWGKGAPALGQKYLVG-RARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW---------GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEPQ 881
            +AFGD +    G  +   G K L+G  A   + + +     +           V FQ  FA ITV L++G+V  R+   AW+ F  LW  F Y   A  ++         GG    +   ID++GG  +H+++G+A L  A  +G R       F P+N+               GFN G+   A+  +    + T +A A ++L W   + +  GK + +GA  G++ GLV ITP    V    A+ +G+ +G +  + + +  K        DD+L V   H V            A P+
Sbjct:   70 IAFGDDVGNIAGNPSQYWGLKGLIGVNAVAADPSTQTAAVNIPLAGTLPATVFVAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGGWIANKLHAIDFAGGTAVHINAGVAALMLAIVLGKRRGWPATLFRPHNLPFVMLGAALLWFGWYGFNAGSATTANGVAGATFVTTTIATAAAMLGWLLTERVRDGKATTLGAASGIVAGLVAITPSCSSVNVLGALAVGVSAGVLCALAVGLKFK-----LGFDDSLDVVGVHLVGGLVGTLLVGLLAAPE 366          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT_MYCBO (Probable ammonia channel OS=Mycobacterium bovis GN=amt PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.741e-24
Identity = 80/302 (26.49%), Postives = 129/302 (42.72%), Query Frame = 3
Query:    6 MAFGDQLLPFWGKGAPALGQKYLVG-RARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW---------GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEPQ 881
            +AFGD +    G  +   G K L+G  A   + + +     +           V FQ  FA ITV L++G+V  R+   AW+ F  LW  F Y   A  ++         GG    +   ID++GG  +H+++G+A L  A  +G R       F P+N+               GFN G+   A+  +    + T +A A ++L W   + +  GK + +GA  G++ GLV ITP    V    A+ +G+ +G +  + + +  K        DD+L V   H V            A P+
Sbjct:   70 IAFGDDVGNIAGNPSQYWGLKGLIGVNAVAADPSTQTAAVNIPLAGTLPATVFVAFQLMFAIITVALISGAVADRLKFGAWLLFAGLWATFVYFPVAHWVFAFDGFAAEHGGWIANKLHAIDFAGGTAVHINAGVAALMLAIVLGKRRGWPATLFRPHNLPFVMLGAALLWFGWYGFNAGSATTANGVAGATFVTTTIATAAAMLGWLLTERVRDGKATTLGAASGIVAGLVAITPSCSSVNVLGALAVGVSAGVLCALAVGLKFK-----LGFDDSLDVVGVHLVGGLVGTLLVGLLAAPE 366          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: MEP2_YEAST (Ammonium transporter MEP2 OS=Saccharomyces cerevisiae GN=MEP2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.847e-22
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGG-GFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPR----LKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKP-SVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            +Q  FAA+T  L+ G    R  +   M F+ LW+   Y   A  +W   G+L + G +DY+GG  +H++SG  GL  A  +G R     +    ++ P++V                FNGG+   A I +  +I++TN+AAA   L W  +D    G+  + +G   G++ GLV ITP AG V  W+A+V+G+++G+        L      L  +DD L  +  H V
Sbjct:  128 YQGMFAAVTGALMLGGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYALILGKRNDPVTRKGMPKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCSGIIAGLVGITPAAGFVPIWSAVVIGVVTGA-----GCNLAVDLKSLLRIDDGLDCYSIHGV 350          
The following BLAST results are available for this feature:
BLAST of DY263055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
AMTB_ECOLI4.686e-3435.39Ammonia channel OS=Escherichia coli (strain K12) G... [more]
AMTB_ECO574.686e-3435.39Ammonia channel OS=Escherichia coli O157:H7 GN=amt... [more]
NRGA_BACSU1.781e-3336.04Ammonium transporter nrgA OS=Bacillus subtilis GN=... [more]
AMT41_ORYSJ2.252e-2848.61Putative ammonium transporter 4 member 1 OS=Oryza ... [more]
AMT1_DICDI5.018e-2831.06Ammonium transporter 1 OS=Dictyostelium discoideum... [more]
AMT1_SCHPO4.248e-2734.98Ammonium transporter 1 OS=Schizosaccharomyces pomb... [more]
AMT2_SCHPO5.548e-2731.92Ammonium transporter 2 OS=Schizosaccharomyces pomb... [more]
AMT_MYCTU5.741e-2426.49Probable ammonia channel OS=Mycobacterium tubercul... [more]
AMT_MYCBO5.741e-2426.49Probable ammonia channel OS=Mycobacterium bovis GN... [more]
MEP2_YEAST1.847e-2231.14Ammonium transporter MEP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263055 ID=DY263055; Name=DY263055; organism=Citrus clementina; type=EST; length=1292bp
ACCGCATGGCTTTTGGTGACCAACTGCTCCCTTTCTGGGGCAAGGGCGCC
CCTGCTCTAGGCCAAAAGTACCTTGTTGGTCGAGCCAGAGTCCCAGAAAG
CACCCACGAAGTTGATGGCAAAACTGTGACCACTGAACCTTTCTATGCTA
TGGCTACACTTGTGTATTTTCAGTTCACTTTTGCTGCGATCACGGTTATT
TTGCTAGCCGGCTCCGTTCTTGGTCGAATGAATATCAGGGCCTGGATGGC
CTTTGTGCCGTTATGGCTCATGTTTTCTTACACTGTAGGTGCTTTTAGTC
TTTGGGGTGGTGGCTTCCTTTATCAGTGGGGTGTCATTGATTATTCTGGT
GGCTATGTTATTCACGTCTCCTCAGGAATTGCCGGTCTCACTGCCGCCTA
TTGGGTTGGACCCAGGCTAAAGAGTGACAAAGAGAGGTTTCCTCCGAATA
ATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTGTGGATGGGATGGTCG
GGTTTCAACGGTGGGGCTCCTTATGCTGCTCATATCGCCTCTTCGATCGC
TATTCTAAACACAAATGTAGCGGCGGCCACGAGCCTTCTTGTTTGGACAT
GTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTTATCGGAGCTGTTCAG
GGCATGATGACTGGCCTTGTTTGCATCACCCCAGGAGCTGGGCTGGTACA
ATCATGGGCGGCTATTGTAATGGGCATTCTTTCTGGTAGCATTCCGTGGG
TAACTATGATGATTCTTCACAAGAAGTGTAGTCTTCTTCAACANGTGGAT
GACACACTGGCTGTGTTTCACACGCACGCGGTGACTGGGCTGTTGGGCGG
GCTACTGACCGGGCTATTTGCGGAGCCACAACTGTGCAAGCTCACACTAC
CAGAGCCCCAAGAAGGCATTCTACGGGGGGAAAAGCGGGGTGCAATTTCT
GAAGCAAATTGTGGGGGTTCTGTTGTTATCCCCTGGAATTTAGTTTCACA
ACAATCATTCTCCTGGCAAAAAGGAAATTCTTCCTTTGAAAATGGCCTGA
GGACACCTCCCCATCGGAAAAAAACCCTTTTCGGAAAAAAAACTTAACCC
TCCTGGGGGGGAGGAAAAAAATAAGAACCCGAAAAAAAAGGGGCGGGGCG
GGGTGCTTCCTATCGGGAAGAAAATGCCCCCCCCCCCCCTTTGTTTTAAT
GGGGGGGGCGGGAGGGGGGGTAACCATAAAACCTTTTTAGGAAATTTTCT
GGGGAGGGGGTGGGTTTTTTTTTTCTGGTTAAAAAACCCCCT
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