DY263055

Overview
NameDY263055
Unique NameDY263055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1292
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: MEP3_YEAST (Ammonium transporter MEP3 OS=Saccharomyces cerevisiae GN=MEP3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.483e-21
Identity = 62/237 (26.16%), Postives = 111/237 (46.84%), Query Frame = 3
Query:  126 VTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            ++ +  Y       FQ  F  + + ++AG+   R  +   M F+ ++    Y    + +W  GG+ YQWGV+D++GG  I + S +AG   +Y++G R ++    F P+NV                FN  +  + ++ S  A +NT ++A T  + W  LD     K S +G   G++ GLV  TP +G +  + +++ GI++G      +     K      VDD+L +   H +
Sbjct:  100 ISDDSTYPELIYAIFQMMFMCVALSIIAGATAERGKLFPHMVFLFVFATLVYCPITYWIWAPGGWAYQWGVLDWAGGGNIEILSAVAGFVYSYFLGRRKENLLINFRPHNVSMVTLGTSILWFGWLLFNAASSLSPNMRSVYAFMNTCLSATTGGMTWCLLDYRSEKKWSTVGLCSGIICGLVAATPSSGCITLYGSLIQGIIAG-----VVCNFATKIKYYLKVDDSLDLLAEHGI 331          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: MEP1_YEAST (Ammonium transporter MEP1 OS=Saccharomyces cerevisiae GN=MEP1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.941e-21
Identity = 62/235 (26.38%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  135 EPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSI-PWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            E  Y       FQ  F+ + + ++AG+   R  +   M F+ +     Y    + +W  GG+ YQWGV+D++GG  I + S ++G   ++++G R +     F P+NV                FN  +  + ++ S  A +NT ++A T  + W  LD     K S +G   G+++GLV  TP +G +  + +++ GI++G +  + T +  + K      VDD + +   H V
Sbjct:  104 EDAYPELAYATFQMMFSCVNLSIIAGATAERGRLLPHMVFLFILATIGYCPVTYWIWSPGGWAYQWGVLDWAGGGNIEILSAVSGFVYSWFLGKRNEKLLINFRPHNVSLVTLGTSILWFGWLLFNSASSLSPNLRSVYAFMNTCLSAITGGMTWCLLDYRSEKKWSTVGLCSGIISGLVAATPSSGCITLYGSLIQGIVAGVVCNFATKLKYYAK------VDDAMDILAEHGV 332          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT_CORGL (Ammonia channel OS=Corynebacterium glutamicum GN=amt PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.579e-20
Identity = 70/247 (28.34%), Postives = 111/247 (44.94%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-----GGFLYQW--GVI---DYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAVXXXXXXXXXXXFAEP 878
            F   FAAI++ L++    GRM   AW+ F  LW  F Y   A  ++       G++  W   V+   D++GG  +H+++G +GL  A  +G R         P+N+               GFNGG    A+  +S  ++ + +AAA  ++ +  ++ +F GKP+  G+  G + GLV ITP A  V    A  +G L   + +    I  KK      VDD+  VF  H +           F +P
Sbjct:   99 FYILFAAISLALVSSGAAGRMRFGAWLVFGVLWFTFVYAPLAHWVFAIDDPESGYVGGWMKNVLEFHDFAGGTAVHMNAGASGLALAIVLGRR---HSMAVRPHNLPLILIGAGLIVAGWFGFNGGTAGGANFLASYVVVTSLIAAAGGMMGFMLVERVFSGKPTFFGSATGTIAGLVAITPAADAVSPLGAFAVGALGAVVSF--WAISWKKG---HRVDDSFDVFAVHGMAGIAGALFVMLFGDP 337          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: Y108_SYNY3 (Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain PCC 6803) GN=sll0108 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.260e-19
Identity = 63/233 (27.04%), Postives = 107/233 (45.92%), Query Frame = 3
Query:  150 MATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKE----RFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            +A    FQ  F+A    +++G+V  R+    ++ F  L +  +Y +    +W  GG+LY  G +D++G  V+H   G A L  A+ +GPRL    +      P +N+               GFN G+  AA  A +   + TN+AA+   L  T    +  GKP +   + G++ GLV IT G   V  W ++++G ++G +   ++    K       +DD +     H V
Sbjct:  180 VAVFFLFQVAFSATAATIVSGAVAERIKFNEFLIFSVLLVGIAYPITGHWVWDAGGWLYTMGFMDFAGSTVVHSVGGWAALAGAFLLGPRLGKFVDGRPGAIPGHNMGFAMLGCLILWIGWFGFNPGSQLAADQACAYIAVTTNLAASAGGLTATFTSWLKDGKPDLTMVINGVLAGLVGITAGCAGVSYWGSVIIGGIAGILVVYSVAFFDK-----IKIDDPVGAISVHLV 407          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT3_DICDI (Ammonium transporter 3 OS=Dictyostelium discoideum GN=amtC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.878e-17
Identity = 55/224 (24.55%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  171 QFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRL------KSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHI-----ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDT 806
            Q+ +AA    +  G++  R+ +  ++ F  +  +  Y   A  +W   G+L+  G++D++GG VIH+ +GI G   ++ +GPR+          +  P ++V               G+  GA           AS ++++ T ++ AT L+    +  IF G   ++  + G++ GLV  T     ++ WAAI++G + G + W +   L     L   VD T
Sbjct:  111 QWAYAATATTIATGAMAERLQLHCYILFTLVQTILIYPFVAHWIWSQNGWLFDLGIVDFAGGAVIHIVAGITGACGSFLLGPRIGRFNQESGKPKNLPGHSVVLMSLGAMILWYSWYGYTAGASLGMTRSRVLPASRVSVVVT-LSGATGLITVLGIGKIFNGHYDLVKGINGLIAGLVSSTSSCAYIEPWAAIIIGFIGGIVYWFSSWALLNWLRLDDPVDST 333          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: Y1017_SYNY3 (Putative ammonium transporter sll1017 OS=Synechocystis sp. (strain PCC 6803) GN=sll1017 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.406e-16
Identity = 64/237 (27.00%), Postives = 108/237 (45.57%), Query Frame = 3
Query:  168 FQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPN--------NVXXXXXXXXXXXXXXSGFNGGAPYAAHIA-----SSIAILNTNVAAATSLLVWTCLDVIFFG--KPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            FQ  FAA    +++G+V+GRM  +A++ +  +     Y +     WGGG+L + G  D++G  ++H   G A L A   +GPR+     RF  N         +               GFN G+  A   A     + +  +NT ++AA   L     D I     KP+++  + G++ GLV IT G   V +W+AI +G+++G      + +L  K      +DD +  +  H +
Sbjct:  135 FQAAFAATAATIVSGAVMGRMYFKAYLIYSAVITGLVYPISGHWKWGGGWLDKLGFHDFAGSLLVHSVGGFAALAAVVVMGPRI----GRFEGNKINSLGYQGITSSSLGVFILWVGWYGFNPGSQLAFVGALNTNTTMLIAVNTTLSAAAGGLAALAFDWITENKRKPNLLVTLNGILGGLVGITAGCDTVSNWSAIAIGVVAG-----ILSVLGTKLLDRLRIDDGVGAWPVHGL 362          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: AMT2_DICDI (Ammonium transporter 2 OS=Dictyostelium discoideum GN=amtB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.047e-13
Identity = 56/215 (26.05%), Postives = 98/215 (45.58%), Query Frame = 3
Query:  144 YAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWG---VIDYSGGYVIHVSSGIAGLTAAYWVGPRL-KSDKER-----FPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAH-----IASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSI 743
            Y   +   FQ+ F A ++ +++GS+  R+++ + + +  +   F Y + A  +W   G+L   G   +ID+SG  V+H+  G  GL   Y VGPR+ + D E       P +++               GFN G+          IAS  A+  T +A A+       +  I  GK  V+ +V  ++ GLV       L+  WAA ++G ++  +
Sbjct:   97 YQNLSFFAFQWAFCATSITIVSGSLAERVHVTSCLVYTIVMSAFIYPLSAHWVWSYNGWLRMIGFNGIIDFSGSIVVHIVGGCIGLVGTYLVGPRIGRFDSESGKPKPLPGHSITIYTLGAFIIWYGFYGFNTGSTLGISGGGIAIASRSAVTMTIIACASCATTLLAIK-IKSGKYDVVKSVNSLLGGLVSSAAVCSLIDPWAAFIIGCVTSFV 310          
BLAST of DY263055 vs. ExPASy Swiss-Prot
Match: Y058_METJA (Putative ammonium transporter MJ0058 OS=Methanocaldococcus jannaschii GN=MJ0058 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.467e-11
Identity = 60/225 (26.67%), Postives = 98/225 (43.56%), Query Frame = 3
Query:  180 FAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVI--DYSGGYVIHVSSGIAGLTAAYWVGPR----LKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPYAAHIASSIAILNTNVAAATSL-LVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQXVDDTLAVFHTHAV 833
            FAA  V ++ G V  R+ I  +     +     Y +    +WGGGF    G+   DY+G   +H+  G+ GL AAY +GPR    +    +  P +N+               GFN G+  A+ IA+ + +   +VA AT++ L    +      +   +    GM  GLV +  G  L     A ++G+L+G     T   + +K      +DD  A+   HA+
Sbjct:   96 FAAAAVTIITGGVAERIKILPYFIGALIVGGILYPIVEHLVWGGGFA-NLGINFHDYAGSGAVHLFGGLVGLMAAYVLGPRIDKYINGKPQAIPGHNIPIAVLGAFILAFGWYGFNIGS--ASGIANGVEL--ASVAMATTMALAGGIIGGALSSRNDPLYTANGMCAGLVAVCSGVDLFTPIGAFIVGLLAGIQQPFTYKFIEEKLK----IDDVCAIGPVHAM 311          
The following BLAST results are available for this feature:
BLAST of DY263055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
MEP3_YEAST3.483e-2126.16Ammonium transporter MEP3 OS=Saccharomyces cerevis... [more]
MEP1_YEAST5.941e-2126.38Ammonium transporter MEP1 OS=Saccharomyces cerevis... [more]
AMT_CORGL8.579e-2028.34Ammonia channel OS=Corynebacterium glutamicum GN=a... [more]
Y108_SYNY33.260e-1927.04Putative ammonium transporter sll0108 OS=Synechocy... [more]
AMT3_DICDI8.878e-1724.55Ammonium transporter 3 OS=Dictyostelium discoideum... [more]
Y1017_SYNY34.406e-1627.00Putative ammonium transporter sll1017 OS=Synechocy... [more]
AMT2_DICDI2.047e-1326.05Ammonium transporter 2 OS=Dictyostelium discoideum... [more]
Y058_METJA1.467e-1126.67Putative ammonium transporter MJ0058 OS=Methanocal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263055 ID=DY263055; Name=DY263055; organism=Citrus clementina; type=EST; length=1292bp
ACCGCATGGCTTTTGGTGACCAACTGCTCCCTTTCTGGGGCAAGGGCGCC
CCTGCTCTAGGCCAAAAGTACCTTGTTGGTCGAGCCAGAGTCCCAGAAAG
CACCCACGAAGTTGATGGCAAAACTGTGACCACTGAACCTTTCTATGCTA
TGGCTACACTTGTGTATTTTCAGTTCACTTTTGCTGCGATCACGGTTATT
TTGCTAGCCGGCTCCGTTCTTGGTCGAATGAATATCAGGGCCTGGATGGC
CTTTGTGCCGTTATGGCTCATGTTTTCTTACACTGTAGGTGCTTTTAGTC
TTTGGGGTGGTGGCTTCCTTTATCAGTGGGGTGTCATTGATTATTCTGGT
GGCTATGTTATTCACGTCTCCTCAGGAATTGCCGGTCTCACTGCCGCCTA
TTGGGTTGGACCCAGGCTAAAGAGTGACAAAGAGAGGTTTCCTCCGAATA
ATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTGTGGATGGGATGGTCG
GGTTTCAACGGTGGGGCTCCTTATGCTGCTCATATCGCCTCTTCGATCGC
TATTCTAAACACAAATGTAGCGGCGGCCACGAGCCTTCTTGTTTGGACAT
GTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTTATCGGAGCTGTTCAG
GGCATGATGACTGGCCTTGTTTGCATCACCCCAGGAGCTGGGCTGGTACA
ATCATGGGCGGCTATTGTAATGGGCATTCTTTCTGGTAGCATTCCGTGGG
TAACTATGATGATTCTTCACAAGAAGTGTAGTCTTCTTCAACANGTGGAT
GACACACTGGCTGTGTTTCACACGCACGCGGTGACTGGGCTGTTGGGCGG
GCTACTGACCGGGCTATTTGCGGAGCCACAACTGTGCAAGCTCACACTAC
CAGAGCCCCAAGAAGGCATTCTACGGGGGGAAAAGCGGGGTGCAATTTCT
GAAGCAAATTGTGGGGGTTCTGTTGTTATCCCCTGGAATTTAGTTTCACA
ACAATCATTCTCCTGGCAAAAAGGAAATTCTTCCTTTGAAAATGGCCTGA
GGACACCTCCCCATCGGAAAAAAACCCTTTTCGGAAAAAAAACTTAACCC
TCCTGGGGGGGAGGAAAAAAATAAGAACCCGAAAAAAAAGGGGCGGGGCG
GGGTGCTTCCTATCGGGAAGAAAATGCCCCCCCCCCCCCTTTGTTTTAAT
GGGGGGGGCGGGAGGGGGGGTAACCATAAAACCTTTTTAGGAAATTTTCT
GGGGAGGGGGTGGGTTTTTTTTTTCTGGTTAAAAAACCCCCT
back to top