DY263057

Overview
NameDY263057
Unique NameDY263057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1158
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPO_STRP1 (Alpha-glycerophosphate oxidase OS=Streptococcus pyogenes serotype M1 GN=glpO PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.151e-19
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  587 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFD----WFEVVYYWVGLKMYDLVA 931
            LD+L+IGGG TG GVAL AA  GL  GL+E +DF+ GTSSRSTKL+HGG+RYL++         +++V   + ER  V + APH+    P + P +D     F +    V + +YDL+A
Sbjct:   20 LDLLIIGGGITGAGVALQAAASGLDTGLIEMQDFAQGTSSRSTKLVHGGLRYLKQF-------DVEVVSDTVSERAVVQQIAPHIPKPDPMLLPVYDEPGSTFSMFRLKVAMDLYDLLA 131          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAHJ (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=glpD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.394e-18
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLS 844
            D+++IGGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++A       Q+K+V    +ER  V +N PH++
Sbjct:   21 DVVIIGGGITGAGIALDASQRGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQA-------QIKVVAETGKERAIVYENGPHVT 98          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPO_LACLA (Alpha-glycerophosphate oxidase OS=Lactococcus lactis subsp. lactis GN=glpO PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.057e-18
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  536 SRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFD-----WFEVVYYWVGLKMYDLVA 931
            S+  ++ A+    N   +D+LVIGGG TG G+ L AA  G++V ++E +DFS GTSSRSTKL+HGG+RYL+    N D   +++V   + ER  V   APH+    P + P +D      F++    + + +YD +A
Sbjct:    4 SKKTRQEAITKIQNEE-MDLLVIGGGITGAGLTLQAAAAGMKVAVLEMQDFSEGTSSRSTKLVHGGIRYLK----NFD---VEVVSDTVSERAVVQGIAPHIPKPDPMLLPIYDDEGKTTFDMFSVKIAMDLYDRLA 132          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAS1 (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=glpD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.057e-18
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCFDWFEVVYYW--VGLKMYDLVA 931
            D+++IGGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V     ER  V +N PH++     + P      +  +   +GL MYD +A
Sbjct:   21 DVVIIGGGITGAGIALDASERGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQL-------QVGVVAETGRERAIVYENGPHVTTPERMLLPMHKGGSMGKFTTSIGLAMYDRLA 129          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAES (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.298e-18
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D++++GGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V    +ER  V +N PH++     + P      F      +GL MYD +A
Sbjct:   21 DVVIVGGGITGAGIALDASNRGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQL-------QVGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSIGLAMYDRLA 129          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAEQ (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glpD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.298e-18
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D++++GGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V    +ER  V +N PH++     + P      F      +GL MYD +A
Sbjct:   21 DVVIVGGGITGAGIALDASNRGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQL-------QVGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSIGLAMYDRLA 129          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_BACSU (Aerobic glycerol-3-phosphate dehydrogenase OS=Bacillus subtilis GN=glpD PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 6.920e-18
Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D+ +IGGG TG G ALDAA+RG++V L E +DF++GTSSRSTKL+HGG+RYL++        ++K+V    +ER  V +N PH++     + P      F      +GL++YD +A
Sbjct:   24 DLFIIGGGITGAGTALDAASRGMKVALSEMQDFAAGTSSRSTKLVHGGLRYLKQF-------EVKMVAEVGKERAIVYENGPHVTTPEWMLLPFHKGGTFGSFTTSIGLRVYDFLA 132          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAAW (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=glpD PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.038e-18
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D+++IGGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V    +ER  V +N PH++     + P      F      +GL MYD +A
Sbjct:   21 DLVIIGGGITGAGIALDASERGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQF-------QIGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSIGLGMYDRLA 129          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAAS (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=glpD PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.038e-18
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D+++IGGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V    +ER  V +N PH++     + P      F      +GL MYD +A
Sbjct:   21 DLVIIGGGITGAGIALDASERGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQF-------QIGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSIGLGMYDRLA 129          
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_STAAR (Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=glpD PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.038e-18
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTPCF--DWFEVVYYWVGLKMYDLVA 931
            D+++IGGG TG G+ALDA+ RG++V LVE +DF+ GTSSRSTKL+HGG+RYL++        Q+ +V    +ER  V +N PH++     + P      F      +GL MYD +A
Sbjct:   21 DLVIIGGGITGAGIALDASERGMKVALVEMQDFAQGTSSRSTKLVHGGLRYLKQF-------QIGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSIGLGMYDRLA 129          
The following BLAST results are available for this feature:
BLAST of DY263057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GLPO_STRP12.151e-1944.54Alpha-glycerophosphate oxidase OS=Streptococcus py... [more]
GLPD_STAHJ1.394e-1852.94Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPO_LACLA4.057e-1838.69Alpha-glycerophosphate oxidase OS=Lactococcus lact... [more]
GLPD_STAS14.057e-1843.10Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPD_STAES5.298e-1843.10Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPD_STAEQ5.298e-1843.10Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPD_BACSU6.920e-1843.10Aerobic glycerol-3-phosphate dehydrogenase OS=Baci... [more]
GLPD_STAAW9.038e-1843.97Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPD_STAAS9.038e-1843.97Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]
GLPD_STAAR9.038e-1843.97Aerobic glycerol-3-phosphate dehydrogenase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263057 ID=DY263057; Name=DY263057; organism=Citrus clementina; type=EST; length=1158bp
AACAAACGAAACGAACAACGGTGACTCCGAAAGGTCACGCGTACGCGCGC
ATTCACGGAGTTCGCTTTCTTCATCGTCCTCTTTACTTTTAATGCTCAGT
CACAAAGCAGCCCTGCCATACCATGCACCTTTATGTGCCACGTGGAGCCA
TAGTGGGGCCCACATCAGCGCAATTACTTAAAAGCTCACAGTACTTCTAC
TTCTCTCGTTCTTTATGGCAACAAAATGGGGTATTTCAGTAAATTATGAA
ACTATTATAATGCTCAAGAGCGATTCCCAACGCAAGCTTGATTTGCTGGC
TGCCGTTAACTGAATCACTACCATTTTTTACTCTTTGCGCCAACTCTGCT
GCAATCTAGGACTCCACACTATCATGTCCGCCACTCGCATCCGCCGCTTC
GGCGCCGTACTCGCCGCCGCTGCCGGCGGAACCTCCATCCTCCTCTTCAC
GCGTCCCTCCATCGCCGGAAACGACCGGGGTCCCTCGCCCGACCTCGTCA
GGAGCCAGATCAAAAATTCGAAAGCCGTTGTTCCGTCGAGAGTCGTCCAG
GAGTCTGCTTTGATTGCCGCAAACAACAGTAATCCTCTTGACATTCTTGT
TATTGGCGGTGGCGCCACTGGATGCGGCGTTGCGCTCGACGCTGCGACGC
GAGGACTTCGCGTTGGCCTTGTCGAGAGAGAGGATTTCTCCTCCGGAACG
TCTTCACGATCCACGAAACTGATTCATGGAGGAGTCCGCTACTTGGAGAA
GGCTGTGTTTAATCTTGACTATGGTCAACTGAAGCTGGTATTCCATGCAC
TTGAGGAGCGTAAACAGGTTATTAAGAATGCACCGCATCTCAGCAATGCT
TTGCCTTGCATGACACCCTGTTTTGACTGGTTTGAAGTAGTATACTACTG
GGTGGGGCTGAAAATGTACGATTTGGTCGCAAGAAGACATCTGTTACATT
TAACTAGATATTATCTGGCACAGATCTGCTGAGCTGTTCCCTACTCTTTG
CATGAAGGCCAAGAATAGAACTTGGAAGGGCCCAAGGGTGGTAATATAAT
GGTCAAAAGAATGAATCCTCCGCCTTAAGGTGGGAATAACAATGAACGGG
CTTCACTGGGTGGGGGCGTGGAGGGGCTTAACCCTGCCAAAAATTAAATT
TCTCTCTT
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