DY263057

Overview
NameDY263057
Unique NameDY263057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1158
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_PSETO (Glycerol-3-phosphate dehydrogenase OS=Pseudomonas tolaasii GN=glpD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.483e-15
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 2 
Query:  554 SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTP 868
            S L A   +   D+ VIGGG  G G+A DAA RGL V L E++D +S TSS S+KLIHGG+RYLE       + + +LV  AL ER+ ++  APH+   +  + P
Sbjct:    4 STLPAPPLAEVYDVAVIGGGINGVGIAADAAGRGLSVFLCEKDDLASHTSSASSKLIHGGLRYLE-------HYEFRLVREALAEREVLLAKAPHIVKQMRFVLP 101
[Close]
BLAST of DY263057 vs. ExPASy Swiss-Prot
Match: GLPD_PSEAE (Glycerol-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=glpD PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.554e-14
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  590 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIKNAPHLSNALPCMTP 868
            D+ V+GGG  G G+A DAA RGL V L E+ D +  TSS S+KLIHGG+RYLE       + + +LV  AL ER+ ++  APH+   L  + P
Sbjct:   16 DVAVVGGGINGVGIAADAAGRGLSVFLCEQHDLAQHTSSASSKLIHGGLRYLE-------HYEFRLVREALAEREVLLAKAPHIVKPLRFVLP 101
The following BLAST results are available for this feature:
BLAST of DY263057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GLPD_PSETO5.483e-1544.76Glycerol-3-phosphate dehydrogenase OS=Pseudomonas ... [more]
GLPD_PSEAE3.554e-1446.24Glycerol-3-phosphate dehydrogenase OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263057 ID=DY263057; Name=DY263057; organism=Citrus clementina; type=EST; length=1158bp
AACAAACGAAACGAACAACGGTGACTCCGAAAGGTCACGCGTACGCGCGC
ATTCACGGAGTTCGCTTTCTTCATCGTCCTCTTTACTTTTAATGCTCAGT
CACAAAGCAGCCCTGCCATACCATGCACCTTTATGTGCCACGTGGAGCCA
TAGTGGGGCCCACATCAGCGCAATTACTTAAAAGCTCACAGTACTTCTAC
TTCTCTCGTTCTTTATGGCAACAAAATGGGGTATTTCAGTAAATTATGAA
ACTATTATAATGCTCAAGAGCGATTCCCAACGCAAGCTTGATTTGCTGGC
TGCCGTTAACTGAATCACTACCATTTTTTACTCTTTGCGCCAACTCTGCT
GCAATCTAGGACTCCACACTATCATGTCCGCCACTCGCATCCGCCGCTTC
GGCGCCGTACTCGCCGCCGCTGCCGGCGGAACCTCCATCCTCCTCTTCAC
GCGTCCCTCCATCGCCGGAAACGACCGGGGTCCCTCGCCCGACCTCGTCA
GGAGCCAGATCAAAAATTCGAAAGCCGTTGTTCCGTCGAGAGTCGTCCAG
GAGTCTGCTTTGATTGCCGCAAACAACAGTAATCCTCTTGACATTCTTGT
TATTGGCGGTGGCGCCACTGGATGCGGCGTTGCGCTCGACGCTGCGACGC
GAGGACTTCGCGTTGGCCTTGTCGAGAGAGAGGATTTCTCCTCCGGAACG
TCTTCACGATCCACGAAACTGATTCATGGAGGAGTCCGCTACTTGGAGAA
GGCTGTGTTTAATCTTGACTATGGTCAACTGAAGCTGGTATTCCATGCAC
TTGAGGAGCGTAAACAGGTTATTAAGAATGCACCGCATCTCAGCAATGCT
TTGCCTTGCATGACACCCTGTTTTGACTGGTTTGAAGTAGTATACTACTG
GGTGGGGCTGAAAATGTACGATTTGGTCGCAAGAAGACATCTGTTACATT
TAACTAGATATTATCTGGCACAGATCTGCTGAGCTGTTCCCTACTCTTTG
CATGAAGGCCAAGAATAGAACTTGGAAGGGCCCAAGGGTGGTAATATAAT
GGTCAAAAGAATGAATCCTCCGCCTTAAGGTGGGAATAACAATGAACGGG
CTTCACTGGGTGGGGGCGTGGAGGGGCTTAACCCTGCCAAAAATTAAATT
TCTCTCTT
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