DY263060

Overview
NameDY263060
Unique NameDY263060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1148
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN3B_ORYSJ (Putative auxin efflux carrier component 3b OS=Oryza sativa subsp. japonica GN=PIN3B PE=3 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 1.545e-86
Identity = 163/265 (61.51%), Postives = 202/265 (76.23%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGC------LEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHAD 914
            MI+  + Y V++A+VPLYVAM++AYGSV+WW + TP+QCSGINRFVA+ AVPLLSFHFISS+DPY MNLRF+AADTLQK++VL  LA WS+   R        L+ +ITLFSVSTLPNTLVMGIPLL  MYG +SG LMVQIVVLQ I+WYTL+LF+FE+R AR+LI+ QFPDTA SI ++HVD D++SL+G Q  E  AE+  DG+L + V +S+ S       R    ++ TPR SNLT  EIYS+ SSRN TPRGS+F  AD
Sbjct:    1 MISWHELYMVLSAVVPLYVAMMVAYGSVRWWGVLTPEQCSGINRFVAVIAVPLLSFHFISSSDPYAMNLRFVAADTLQKVLVLAALAAWSRFPARFVPPAWPPLDCSITLFSVSTLPNTLVMGIPLLVSMYGPYSGDLMVQIVVLQSIVWYTLLLFLFEFRAARVLIAAQFPDTAASIAAVHVDPDVVSLEGSQ-AEAHAEVAPDGRLRMVVCRSSVS-------RRSAAAAATPRASNLTGVEIYSISSSRNATPRGSTFTLAD 257          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN6_ARATH (Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 3.120e-79
Identity = 150/248 (60.48%), Postives = 187/248 (75.40%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFP-DTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRN 878
            MIT  +FY VM AM PLY AM +AYGSVKW KIFTP QCSGINRFV++FAVP+LSFHFIS N+PYKM+  FI ADTL KI V V+L++W+   K G L+W ITLFS++TLPNTLVMGIPLL+ MYG+++ +LMVQ+VVLQCIIWYTL+LF+FE R ARLLI  +FP   AGSI  I VD D++SLDG  PL T+ E   +G++ + +R+S +S  D     S  L   TPR SNL+NAEI+S+ +  N
Sbjct:    1 MITGNEFYTVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCL---TPRASNLSNAEIFSVNTPNN 245          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN8_ARATH (Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.013e-45
Identity = 87/157 (55.41%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGA 608
            MI   D Y V+ AMVPLYVA+IL YGSVKWW IFT DQC  INR V  F +PL +  F +  DP+ MN RFIAAD L K+I++ VLA+W+K S +G   W+IT FS+ TL N+LV+G+PL K MYG+ +  L+VQ  V Q I+W TL+LF+ E+R A
Sbjct:    1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTAHVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPLAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKA 157          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN5_ORYSJ (Probable auxin efflux carrier component 5 OS=Oryza sativa subsp. japonica GN=PIN5 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.910e-44
Identity = 94/195 (48.21%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVL---AIWSKLSKRGC-----------LEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDI 680
            MIT ++ Y V+ AM PLY A  L YGSV+W K F+ +QC+GIN FVAL+AVP+L F  +S+N+ YKMN R IAADTLQK ++L+ L   A+W +   RG            L+W IT FSV++LPNT++MG+PLL GMYG  S  LM QIVV+Q  IWY +++F++EY  AR   S   P ++     I   S +
Sbjct:    1 MITGSEVYQVVEAMAPLYTAAALGYGSVRWLKAFSNEQCAGINHFVALYAVPVLIFDMVSTNNVYKMNGRLIAADTLQKAVLLLGLMAWALWERSRARGAGAKAKAAVSSPLQWVITCFSVASLPNTIIMGVPLLNGMYGPVSKDLMKQIVVMQFCIWYNVIIFLYEYMAARRSASAPPPASSEGSAKISPSSPV 195          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN5_ARATH (Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 6.145e-43
Identity = 91/200 (45.50%), Postives = 132/200 (66.00%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAI----WSKLSKR-GCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAE 722
            MI+  D YHV++A VPLYV+M L + S +  K+F+P+QC+GIN+FVA F++PLLSF  IS N+P+KM+ + I +D LQK +V+VVLA+    W     R G L W IT  S+S LPNTL++G+P+L  +YG+ + S++ QIVVLQ +IWYT++LF+FE   AR L     P +  S+     D +  +++     E D E
Sbjct:    1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIISENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLILGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARAL-----PSSGASLEHTGNDQEEANIEDEPKEEEDEE 195          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN6_ORYSJ (Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.977e-41
Identity = 77/161 (47.83%), Postives = 113/161 (70.19%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSK-LSKRGC-LEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARL 614
            MI   D Y V+ A VPLY A+ L YGSV+WW+IFT +QC  +NR VA FA+P  +F F    DP+++N R +AAD + K +++ V+  W++ +SK GC + W+IT FS+STL N+LV+G+P+ + MYGE++  L+VQ+ V Q I+W TL+LF+ E R A +
Sbjct:    1 MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGVPMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAAI 161          
BLAST of DY263060 vs. ExPASy Swiss-Prot
Match: PIN4_ORYSJ (Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.954e-37
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  138 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSK------LSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGA 608
            MI   D Y V+ AM PLY A+ L YGSV+WW+ FT +QC+ IN  V  F++P  +F F+   DP+ MN R IAAD + K I +  +A W++       +K G   W+IT FS++ L NTLV+G+PLL  MYG ++  L+VQI V+Q ++W+ L+L  FE R A
Sbjct:    1 MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVVRTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTLVVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKA 163          
The following BLAST results are available for this feature:
BLAST of DY263060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PIN3B_ORYSJ1.545e-8661.51Putative auxin efflux carrier component 3b OS=Oryz... [more]
PIN6_ARATH3.120e-7960.48Probable auxin efflux carrier component 6 OS=Arabi... [more]
PIN8_ARATH1.013e-4555.41Putative auxin efflux carrier component 8 OS=Arabi... [more]
PIN5_ORYSJ1.910e-4448.21Probable auxin efflux carrier component 5 OS=Oryza... [more]
PIN5_ARATH6.145e-4345.50Putative auxin efflux carrier component 5 OS=Arabi... [more]
PIN6_ORYSJ1.977e-4147.83Probable auxin efflux carrier component 6 OS=Oryza... [more]
PIN4_ORYSJ2.954e-3745.40Probable auxin efflux carrier component 4 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CG12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263060 ID=DY263060; Name=DY263060; organism=Citrus clementina; type=EST; length=1148bp
TTTTCCTCTCATCTTCGTTGTCACTTCCACCAATATTTCTTCTTCTTCAA
CCCCCCACCCTTCTCTCTTTCTTGTTTCTTCTTTGATTGCTAAGTTTTGT
TAATTCATTCAATTAGTATCGTTGCAAGTAACCAAAGATGATCACACTCG
CAGACTTTTACCATGTCATGACTGCAATGGTTCCACTTTATGTGGCCATG
ATCTTAGCTTATGGGTCAGTGAAATGGTGGAAGATTTTCACTCCTGATCA
GTGCTCAGGCATCAACCGTTTTGTTGCTCTCTTTGCAGTCCCCTTGCTCT
CTTTCCATTTCATCTCATCCAACGACCCTTACAAAATGAACTTGAGGTTC
ATTGCAGCTGATACTCTTCAAAAAATCATAGTCCTTGTGGTTCTAGCAAT
TTGGAGCAAGTTGAGCAAAAGGGGTTGTTTAGAATGGACCATCACTCTAT
TTTCAGTATCAACTTTACCAAACACTCTAGTCATGGGCATTCCTTTACTC
AAAGGAATGTACGGCGAGTTCTCTGGAAGCTTGATGGTGCAAATAGTTGT
TCTTCAATGCATCATTTGGTACACTTTGATGTTATTCATGTTTGAATATA
GAGGTGCCAGGTTGCTTATCTCTGAGCAATTCCCAGACACTGCTGGCTCT
ATTGTCTCAATACATGTTGATTCTGACATCATGTCACTTGATGGAAGGCA
GCCACTTGAAACAGACGCTGAGATCAAAGAAGATGGAAAGCTTCATGTCA
CTGTCCGAAAATCAAATGCCTCAAGATCAGACATTTTCTCAAGAAGGTCT
CAAGGGCTGTCGTCAACAACTCCACGCCCATCAAACTTAACGAATGCAGA
GATTTACTCTTTGCAGTCATCAAGAAACCCAACACCACGAGGGTCAAGCT
TTAACCACGCTGACTTTTACTCAATGATGGCCGGTGGCCGCAGTTCAACT
TCGGCGCCACTGACGTGTATGGTCTCTCGGCGACGTCGCGTGGAACCACC
CCCAAAACATCCAAATATAAAAAGAAGCTAAAAATGCTAAAAAAGTAAGG
GTTCCTCCCTACCCCGGCACCAAATCCGGGGATGTTTTCTCCCACTAAAA
AATAATACTAAAAATTAAAGGCCCTGGGCAAAAAAAAAAGGAAATTAA
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