DY263063

Overview
NameDY263063
Unique NameDY263063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1258
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: MDTK_YERP3 (Multidrug resistance protein mdtK OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdtK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.862e-12
Identity = 72/298 (24.16%), Postives = 128/298 (42.95%), Query Frame = 2
Query:  197 WLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FG---FGNKGAALSNAISYWTNVIILAIYIKFSPKCE--KTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-----GL*IWLLSPFGGKGLWKGIICG 1057
            W +P  L + +L+ Q   L       P M+   +  LV++   +  I+G FG    G  G  ++ A  YW   +++  Y+  +   +  K   GF+    + ++   GLG+P AL +  E + +  + L+  + P   +  +   I+LN  S++F +P     A + RV   LG G    A++A    + + L    + +   +  R     +Y+   EV+   + +M + AL       +V    +L G        ++   AY+L GLP     GL  ++L   G  G W G I G
Sbjct:  136 WGVPGYLFFQVLRNQCEGLSKTK---PGMVIGFVGLLVNIPINYIFIYGKFGAPALGGVGCGVATASVYWVMFLMMRWYVTRARSQQDIKLEKGFAAPDWQVMKRLSGLGLPVALALFFEVTLFAVVALL--VSPLGIVAVAGHQIALNFSSLMFMLPMSLSVAATIRVGFRLGQGSVEQAQVAAYTSMAVGLLLASVTAVFTIVFREHIALLYNKTPEVVTMASHLMLLAALYQLSDAVQVIGSGVLRGYKDTRSIFFITFTAYWLLGLPSGYLLGLTDYILPAMGPAGFWIGFIIG 428          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: MDTK_YERE8 (Multidrug resistance protein mdtK OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdtK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.294e-12
Identity = 85/348 (24.43%), Postives = 147/348 (42.24%), Query Frame = 2
Query:   62 HMLRAMLVLSFS-SIPIAVLWAYTGKIFTTLHQ-DPEISFHAGIYAR---WLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FG---FGNKGAALSNAISYWTNVIILAIYIKFSPKCE--KTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-----GL*IWLLSPFGGKGLWKGIICG 1057
            H +R    L+F  S+ I V+   +  I   +H  DP ++  A  +     W  P  L + +L+ Q   L       P M+   I  LV++   +  I+G FG    G  G  ++    YW   +++  Y+  +   +  K   GF+    + ++   GLG+P AL +  E + +  + L+  + P   +  +   I+LN  S++F +P     A + RV   LG G    AR+A    I + L    + +   V  R     +Y+   EV+   + +M + AL       +V    +L G        ++   AY+L GLP     GL  +++   G  G W G + G
Sbjct:   86 HQVRQGFWLAFCVSVLIMVVIYNSDHIIMRMHNIDPVLADKAVGFLHAIMWGAPGYLFFQVLRNQCEGLSKTK---PGMVIGFIGLLVNIPINYIFIYGKFGAPALGGVGCGVATGTVYWVMFLMMRWYVTRARSQQDIKLEKGFAAPDWQVMKRLGGLGLPVALALFFEVTLFAVVALL--VSPLGIVAVAGHQIALNFSSLMFMLPMSLSVAATIRVGFRLGQGSVDDARVAAYTSIAVGLMLACVTAIFTVVFREHIALLYNKTPEVVVMASHLMLLAALYQLSDAIQVIGSGVLRGYKDTRSIFFITFTAYWLLGLPSGYLLGLTDYIVPAMGPSGFWIGFVIG 428          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: NORM_BACCR (Probable multidrug resistance protein norM OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=norM PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.415e-11
Identity = 85/369 (23.04%), Postives = 152/369 (41.19%), Query Frame = 2
Query:    2 AVETFCGQAFGAKQYRMMGVHMLRAM-LVLSFSSIPIAVLWAYTGKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FGF---GNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFS------KEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-GL*IWLLSPFGGKGLWKGIICGEWFPA 1072
            A      Q  G+K+   +   +++A+ L +  S + I + +     I   +  +  +   A  +   +   I+P         F+         M+ T +S  ++V+  + LIFG FGF   G  GAA+++  +YW  +II  I I    + ++ +  F+      + +L +  +FL LG+P    +  E S +  + LM        +  +    ++N  S+++  P     A++  V  E+GA R   A+    I I LAL   +L S +          +Y+ D +V       +    L           Q  L G    N+   + L AY++ GLP G  +   + +  KG W G+I G  F A
Sbjct:   70 ATTPIVAQLVGSKKKEDVPHVVIQAVYLAICASFVVILIGFFVVSPILNGMRLEEPVERIAAQFLSIIAIGIIPLFTYTVLRGFIDALGKTRTTMIITLLSLPINVILNYLLIFGNFGFPKLGGVGAAIASTATYWCILIITVIII----QTKEPFASFNIFKQLYRPSLSSWIAFLKLGVPIGFAIFFETSIFAAVTLMMSNFSTTTI--AAHQAAMNFASLLYMTPLSLAMAMTIAVGFEVGAKRYDNAKQYGLIGIGLALAFALLYSILLYFFDDQIASIYTTDAKVHHLAKEFLIFAILFQISDAIATPVQGALRGYKDVNVALIMTLIAYWIIGLPLGYILATYTEWAAKGYWIGLIIGLAFGA 432          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: MDTK_PHOLL (Multidrug resistance protein mdtK OS=Photorhabdus luminescens subsp. laumondii GN=mdtK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.848e-11
Identity = 81/340 (23.82%), Postives = 145/340 (42.65%), Query Frame = 2
Query:   80 LVLSFSSIPIAVLWAYTGKIFTTLHQDPEISFHAGIYAR---WLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FG---FGNKGAALSNAISYWTNVIILAIYIK--FSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-----GL*IWLLSPFGGKGLWKGIICG 1057
            L +  S I IA+L+     I    + DP ++  A  +     W  P  L Y +L+ Q   L       P M+ + +  L+++   +  I+G FG    G  G  ++ A  YW   +++  Y+K   S +  +    F+      L+    LG+P A+ V  E + +  + L+  + P      +   I+ N  S++F  P    +A + RV   LG      AR++    I++ L    L ++ ++  R     +Y+++ EVI   + +M   AL       +V    +L G        Y+   A+++ GLP     GL  +++   G +G W G I G
Sbjct:   94 LAIFLSIIIIAILYNSKFLIDRQHNIDPILAEKAVGFIHAIMWGAPGYLFYQVLRNQCEGLSKTK---PGMVISFLGLLINIPINYIFIYGKFGAPALGGVGCGVATASVYWVMFLLMRWYVKRASSQRDIRPKHRFAAPEWHILKRISALGLPIAMAVFFEITLFAIVALL--ISPLGVTAVAGHQIAQNFSSLMFMFPISLAAATTIRVGYNLGKKSIENARISAYTGIMVGLVFACLTATFSIILREPIALMYNDNPEVITMASHLMLFAALYQLSDAIQVVGAGVLRGYKDTRSIFYITFIAFWILGLPSGYILGLTDYIVPAMGPQGFWIGFIIG 428          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: NORM_BORPA (Probable multidrug resistance protein norM OS=Bordetella parapertussis GN=norM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.116e-11
Identity = 78/343 (22.74%), Postives = 140/343 (40.82%), Query Frame = 2
Query:   98 SIPIAVLWAYTGKIFTTLHQDPEISFHAGIYAR---WLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFGF----GFGNKGAALSNAISY------WTNVIIL----AIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSN-----DIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-GL*IWLLSPFGGKGLWKGIICG 1057
            S+P  +L  +   I   + Q PE++  AG Y R   W +P  L + +L+     LQ   +   + L+   + +++V   W L+FG       G  GA L++A++          V+ L      Y  F    +  W        + L  F  LG+P       E + +     + G L  P+L  +  +I++   SV F IP+G   A + RV +  GA +P     A      L +    + +++ + A G+    + +     + +V+R   + + V AL      ++V    +L G     +        Y+  GLP G  +   + + G G+W G+  G
Sbjct:  107 SVPGCLLLWHGEAILLAIDQPPELAAQAGAYLRALMWAMPPFLGFLVLRSFVTALQRPRSAFLIALA---AIVLNVFGNWVLVFGNLGAPALGLVGAGLASALATLGLFLGMVGVVCLDRRFRRYHLFGDVWQPDW--------QRLAEFWKLGLPIGAATAFEVTIFNAAAFLMGWLGEPEL--AAHAIAIQIASVTFMIPYGIAQAATVRVGHAYGARQPDQVARAGWCAFSLGIGSMAIAAALMLLAPGLLVSAFLDIGDPANAQVLRLATAYLAVAALFQIVDGAQVLGAGMLRGLHDTRVPMLYAALGYWGVGLPSGAALAFWAGWRGVGVWSGLAIG 436          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: NORM_BORBR (Probable multidrug resistance protein norM OS=Bordetella bronchiseptica GN=norM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.116e-11
Identity = 78/343 (22.74%), Postives = 140/343 (40.82%), Query Frame = 2
Query:   98 SIPIAVLWAYTGKIFTTLHQDPEISFHAGIYAR---WLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFGF----GFGNKGAALSNAISY------WTNVIIL----AIYIKFSPKCEKTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSN-----DIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-GL*IWLLSPFGGKGLWKGIICG 1057
            S+P  +L  +   I   + Q PE++  AG Y R   W +P  L + +L+     LQ   +   + L+   + +++V   W L+FG       G  GA L++A++          V+ L      Y  F    +  W        + L  F  LG+P       E + +     + G L  P+L  +  +I++   SV F IP+G   A + RV +  GA +P     A      L +    + +++ + A G+    + +     + +V+R   + + V AL      ++V    +L G     +        Y+  GLP G  +   + + G G+W G+  G
Sbjct:  107 SVPGCLLLWHGEAILLAIDQPPELAAQAGAYLRALMWAMPPFLGFLVLRSFVAALQRPRSAFLIALA---AIVLNVFGNWVLVFGNLGAPALGLVGAGLASALATLGLFLGMVGVVCLDRRFRRYHLFGDVWQPDW--------QRLAEFWKLGLPIGAATAFEVTIFNAAAFLMGWLGEPEL--AAHAIAIQIASVTFMIPYGIAQAATVRVGHAYGARQPDQVARAGWCAFSLGIGSMAIAAALMLLAPGLLVSAFLDIGDPANAQVLRLATAYLAVAALFQIVDGAQVLGAGMLRGLHDTRVPMLYAALGYWGVGLPSGAALAFWAGWRGVGVWSGLAIG 436          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: NORM_BACHD (Probable multidrug resistance protein norM OS=Bacillus halodurans GN=norM PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.376e-11
Identity = 79/360 (21.94%), Postives = 149/360 (41.39%), Query Frame = 2
Query:    2 AVETFCGQAFGAKQYRMMGVHMLRAMLVLSFSSIPIAVLWAYT-GKIFTTLHQDPEISFHAGIYARWLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FGF---GNKGAALSNAISYWTNVII-LAIYIKFSPKCE-KTWTGFSKEALENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMSISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSSIAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-GL*IWLLSPFGGKGLWKGIICG 1057
            A+     Q+ GA++   +    L+ + +    SI + ++ A     I + +  + E+   A  Y   L   I+P  +       + +       M  T +S  +++   + LIFG  GF   G  GA  ++AI+YW  + + + + +K  P  + + +      +L+  +  L LG+P    +  E S +  + L+        +  +    ++N  S ++ IP      ++  V  E+GA R   AR   ++ I  AL  G++   I    R     +Y+ND +V   +   +                Q +L G    N+   + L ++++ GLP G  +   SP G  G W G+I G
Sbjct:   70 ALTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVGRIAKEYLIGLAFGIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINIFFNYVLIFGKLGFPRLGGVGAGYASAITYWFILAVAIVVVVKVRPFTDFQLFKKLYHVSLKKWKEILLLGLPIGFTIFFETSIFAAVTLLMSTFDTATI--AAHQAAVNFASFLYMIPLSIAFTLTIAVGYEVGAKRVEDARQYSRLGITFALIMGLVAGVIIYVLRAPVASLYTNDSQVAWLIQQFLIYSIFFQLSDALATPIQGVLRGHKDVNVPFVMALVSFWIIGLPTGYLLANFSPLGPYGYWIGLITG 427          
BLAST of DY263063 vs. ExPASy Swiss-Prot
Match: MDTK_PROMH (Multidrug resistance protein mdtK OS=Proteus mirabilis (strain HI4320) GN=mdtK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.021e-11
Identity = 94/389 (24.16%), Postives = 163/389 (41.90%), Query Frame = 2
Query:    2 AVETFCGQAFGAKQYRMMGVHMLRAMLVLSFSSIPIAVLWAYTGKIFTTLHQ-DPEISFHA--GIYA-RWLIPSILPYGLLQCQHRFLQTQNNILPLMLSTGISTLVHVLSCWTLIFG-FG---FGNKGAALSNAISYWTNVIILAIYIKFSPKCEKTWTGFSKEAL-----ENLRSFLGLGIPSALMVCLEFSSYEFLVLMSGLLPNPKLETSVMS--ISLNTISVVFRIPFGFGSAVSTRVSNELGAGRPYAARLAVQIVIILALTEGVLLSS----IAVAARGIWGYVYSNDIEVIRYMASIMPVLALSNSWMESRVYFQVLLEGGGWQNLGAYVNLEAYYLKGLP-----GL*IWLLSPFGGKGLWKGIICGEWFPAFGL*SLLW 1096
            A+     Q  G+ Q + +     +   + +F SI +  +   +  I    H  +PE++  A   I+A  W  P  L Y +L+ Q   L       P M+   I  L+++   +  I+G FG    G  G  ++ A  +W   +++  Y++ +P          K+ L       ++    LG+P  L +  E +    L  +  LL +P   T+V S  I+LN  S++F  P   G A + RV   LG      AR +     I AL  G++L+S     ++  R     +Y+++IEV+   + +M   AL       +V    +L G        ++   AY++ GLP     G   +++   G  G W G I G    A  + + +W
Sbjct:   67 ALTPIVAQLNGSGQRKHIANRTQQGFWLATFLSIMVIAILYNSRFIIEAQHDIEPELAEKAIGFIHAIMWGAPGCLYYQVLRSQCEGLSKTK---PGMIIGFIGLLINIPVNYAFIYGKFGAPQLGGIGCGVATASVFWAMFLMMRYYVRRAPTQRDV---MPKKRLVLPEFHTIKRITLLGLPVGLALFFEVT----LFAVVALLVSPLGVTAVASHQIALNFSSLMFMFPLSLGIAATIRVGYNLGQRSTEQARTSA----ITALAVGLMLASCTAIFSIIFREKIALMYNDNIEVVTLASHLMLFAALYQLSDSVQVIGSGVLRGYKDTRSIFFITFIAYWVIGLPSGYLLGRTDYIVEAMGPAGFWIGFILGLTASAIMMGTRIW 441          
The following BLAST results are available for this feature:
BLAST of DY263063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
MDTK_YERP34.862e-1224.16Multidrug resistance protein mdtK OS=Yersinia pseu... [more]
MDTK_YERE88.294e-1224.43Multidrug resistance protein mdtK OS=Yersinia ente... [more]
NORM_BACCR1.415e-1123.04Probable multidrug resistance protein norM OS=Baci... [more]
MDTK_PHOLL1.848e-1123.82Multidrug resistance protein mdtK OS=Photorhabdus ... [more]
NORM_BORPA4.116e-1122.74Probable multidrug resistance protein norM OS=Bord... [more]
NORM_BORBR4.116e-1122.74Probable multidrug resistance protein norM OS=Bord... [more]
NORM_BACHD5.376e-1121.94Probable multidrug resistance protein norM OS=Baci... [more]
MDTK_PROMH7.021e-1124.16Multidrug resistance protein mdtK OS=Proteus mirab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263063 ID=DY263063; Name=DY263063; organism=Citrus clementina; type=EST; length=1258bp
TGCAGTGGAAACTTTCTGTGGACAGGCATTCGGAGCAAAACAGTATCGTA
TGATGGGGGTACACATGCTGAGAGCTATGCTTGTTCTTTCATTTTCAAGC
ATCCCCATAGCAGTCCTTTGGGCCTACACTGGGAAAATTTTCACAACCCT
ACATCAAGATCCAGAAATTTCATTCCATGCAGGAATATATGCTCGGTGGT
TGATCCCTAGTATCCTTCCTTATGGCCTTCTTCAGTGCCAACACAGATTC
CTGCAAACCCAAAATAATATTTTGCCATTGATGTTAAGCACTGGAATTTC
AACATTGGTTCATGTCCTTTCTTGTTGGACTTTAATTTTTGGATTTGGGT
TTGGTAACAAAGGAGCTGCCTTGTCCAATGCCATCTCTTATTGGACAAAT
GTAATTATCTTGGCAATTTATATAAAGTTTTCCCCTAAATGTGAGAAAAC
TTGGACTGGTTTCTCCAAGGAGGCTCTGGAAAATCTCCGCAGCTTCCTTG
GATTAGGAATTCCTTCAGCTCTTATGGTCTGCCTGGAATTTTCGTCATAT
GAGTTTTTGGTCCTGATGTCGGGTCTTCTTCCCAATCCCAAGCTAGAAAC
ATCAGTGATGTCGATCAGCCTTAACACAATTTCAGTGGTCTTCAGAATCC
CCTTTGGTTTTGGCAGTGCTGTAAGCACGAGAGTTTCAAATGAATTAGGT
GCTGGAAGACCTTATGCTGCACGTCTTGCAGTACAAATTGTGATAATCTT
GGCACTTACTGAGGGTGTATTGCTAAGCTCAATTGCAGTTGCAGCTCGGG
GCATATGGGGCTATGTATACTCCAATGACATTGAAGTAATCAGATATATG
GCTTCCATAATGCCAGTGCTTGCTCTATCCAACTCATGGATGGAATCCAG
GGTGTACTTTCAGGTGTTGCTAGAAGGTGGTGGTTGGCAGAACCTCGGTG
CATATGTGAATCTAGAAGCTTATTATCTAAAAGGCCTTCCTGGGCTGTAA
ATTTGGCTTTTGTCTCCATTTGGGGGCAAGGGACTTTGGAAGGGGATAAT
ATGTGGGGAGTGGTTCCCAGCATTTGGGCTTTAGTCATTACTCTGGCCCA
AAACGGGGAACAAAAAGGAAAAAAGGGCCAGGGAAAAAAGCTTTTGCTCC
CAAAATTCAAAATGAAAAGGCCCCCCAAAAAACTGGTGAAAATGGAAATT
TTGTTCTTTTATTTAAAAAAGGGCGGGGGGAAATTTTTTTAAAAAAAAAT
TTTCCCCT
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