DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_SCEUN (L-lactate dehydrogenase A chain OS=Sceloporus undulatus GN=LDHA PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 83/160 (51.88%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEMLDLQH + FL   KI++  DYAVTA S L I+TAGARQ  GE            FK IIP +VKYSPDC LL+V NP+DIL  VA  +SG P + V GS  NL+ +    +   +L+
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMLDLQHGSLFLKTPKIVSGKDYAVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCKLLVVSNPVDILTYVAWKISGFPKHRVIGSGCNLDSARFRHLMGERLH 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_GILSE (L-lactate dehydrogenase A chain OS=Gillichthys seta GN=ldha PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H +         K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE++DLQH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    I   KL+
Sbjct:    6 KLISHVSKEEAVGSRNKVTVVGVGMVGMASAISILLKDLCDELALVDVMEDKLKGEVMDLQHGSLFLKTHKIVADKDYSVTANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHIMGEKLH 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_GILMI (L-lactate dehydrogenase A chain OS=Gillichthys mirabilis GN=ldha PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H +         K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE++DLQH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    I   KL+
Sbjct:    6 KLISHVSKEEAVGSRNKVTVVGVGMVGMASAISILLKDLCDELALVDVMEDKLKGEVMDLQHGSLFLKTHKIVADKDYSVTANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHIMGEKLH 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_DISMA (L-lactate dehydrogenase A chain OS=Dissostichus mawsoni GN=ldha PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P N V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRNRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_DISEL (L-lactate dehydrogenase A chain OS=Dissostichus eleginoides GN=ldha PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 83/174 (47.70%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P N V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRNRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CHICK (L-lactate dehydrogenase A chain OS=Gallus gallus GN=LDHA PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.475e-35
Identity = 85/164 (51.83%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KISV+G G VGMA A +IL +D  +EL LVD   DKL+GEMLDLQH + FL   KI++  DY+VTA S L IVTAGARQ  GE            FK IIP +VKYSPDC LLIV NP+DIL  VA  +SG P + V GS  NL+ +    +   +L  + L
Sbjct:   20 HNKISVVGVGAVGMACAISILMKDLADELTLVDVVEDKLKGEMLDLQHGSLFLKTPKIISGKDYSVTAHSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCKLLIVSNPVDILTYVAWKISGFPKHRVIGSGCNLDSARFRHLMGERLGIHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CAICA (L-lactate dehydrogenase A chain OS=Caiman crocodilus apaporiensis GN=LDHA PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.927e-35
Identity = 83/164 (50.61%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++  DY+VTA S L I+TAGARQ  GE            FK IIP +VK+SPDC LL+V NP+DIL  VA  +SG P + V GS  NL+ +    +   +L  + L
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVVEDKLRGEMLDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKHSPDCKLLVVSNPVDILTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGERLGIHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_MOUSE (L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 3.287e-35
Identity = 83/162 (51.23%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++S DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLKTPKIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHAL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_CAICA (L-lactate dehydrogenase B chain OS=Caiman crocodilus apaporiensis GN=LDHB PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 84/173 (48.55%), Postives = 106/173 (61.27%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K I H A  S T  + K++V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP ++KYSPDCI+L+V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:    7 KLITHIASES-TIPNNKVTVVGVGQVGMACAVSILGKSLCDELALVDVLEDKLKGEMMDLQHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIIKYSPDCIILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMSEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PATTE (L-lactate dehydrogenase A chain OS=Patagonotothen tessellata GN=ldha PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P    +K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHA_SCEUN1.475e-3551.88L-lactate dehydrogenase A chain OS=Sceloporus undu... [more]
LDHA_GILSE1.475e-3547.70L-lactate dehydrogenase A chain OS=Gillichthys set... [more]
LDHA_GILMI1.475e-3547.70L-lactate dehydrogenase A chain OS=Gillichthys mir... [more]
LDHA_DISMA1.475e-3547.70L-lactate dehydrogenase A chain OS=Dissostichus ma... [more]
LDHA_DISEL1.475e-3547.70L-lactate dehydrogenase A chain OS=Dissostichus el... [more]
LDHA_CHICK1.475e-3551.83L-lactate dehydrogenase A chain OS=Gallus gallus G... [more]
LDHA_CAICA1.927e-3550.61L-lactate dehydrogenase A chain OS=Caiman crocodil... [more]
LDHA_MOUSE3.287e-3551.23L-lactate dehydrogenase A chain OS=Mus musculus GN... [more]
LDHB_CAICA4.293e-3548.55L-lactate dehydrogenase B chain OS=Caiman crocodil... [more]
LDHA_PATTE4.293e-3547.13L-lactate dehydrogenase A chain OS=Patagonotothen ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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