DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_NOTCO (L-lactate dehydrogenase A chain OS=Notothenia coriiceps neglecta GN=ldha PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAVSILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_LEPNU (L-lactate dehydrogenase A chain OS=Lepidonotothen nudifrons GN=ldha PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P    +K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CORNI (L-lactate dehydrogenase A chain OS=Coryphopterus nicholsi GN=ldha PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H +         K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE++DLQH + FL   KI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    I   KL+
Sbjct:    6 KLISHVSKEEAVGSRNKVTVVGVGMVGMASAISILLKDLCDELALVDVMEDKLKGEVMDLQHGSLFLKTHKIVGDKDYSVTANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHIMGEKLH 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CHAGU (L-lactate dehydrogenase A chain OS=Champsocephalus gunnari GN=ldha PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P    +K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_RAT (L-lactate dehydrogenase A chain OS=Rattus norvegicus GN=Ldha PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 83/162 (51.23%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++S DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PARCR (L-lactate dehydrogenase A chain OS=Parachaenichthys charcoti GN=ldha PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PAGBO (L-lactate dehydrogenase A chain OS=Pagothenia borchgrevinki GN=ldha PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PAGBE (L-lactate dehydrogenase A chain OS=Pagothenia bernacchii GN=ldha PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_NOTAN (L-lactate dehydrogenase A chain OS=Notothenia angustata GN=ldha PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_GOBGI (L-lactate dehydrogenase A chain OS=Gobionotothen gibberifrons GN=ldha PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHA_NOTCO4.293e-3547.13L-lactate dehydrogenase A chain OS=Notothenia cori... [more]
LDHA_LEPNU4.293e-3547.13L-lactate dehydrogenase A chain OS=Lepidonotothen ... [more]
LDHA_CORNI4.293e-3547.13L-lactate dehydrogenase A chain OS=Coryphopterus n... [more]
LDHA_CHAGU4.293e-3547.13L-lactate dehydrogenase A chain OS=Champsocephalus... [more]
LDHA_RAT5.607e-3551.23L-lactate dehydrogenase A chain OS=Rattus norvegic... [more]
LDHA_PARCR5.607e-3547.13L-lactate dehydrogenase A chain OS=Parachaenichthy... [more]
LDHA_PAGBO5.607e-3547.13L-lactate dehydrogenase A chain OS=Pagothenia borc... [more]
LDHA_PAGBE5.607e-3547.13L-lactate dehydrogenase A chain OS=Pagothenia bern... [more]
LDHA_NOTAN5.607e-3547.13L-lactate dehydrogenase A chain OS=Notothenia angu... [more]
LDHA_GOBGI5.607e-3547.13L-lactate dehydrogenase A chain OS=Gobionotothen g... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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