DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CHLT3 (L-lactate dehydrogenase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ldh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.323e-11
Identity = 40/145 (27.59%), Postives = 68/145 (46.90%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLN 569
            K+ +IG G VG   A  +  +    E+ +VDA   K + +  D++HA  F      +   D+    G+ + I++AG  Q  GE            F+ I+P +V    + ++++  NP+DIL  +   L+G P   V GS   L+
Sbjct:    2 KVGIIGAGFVGATAAFAMAMRGSCSEIVIVDADNAKAKAQASDIEHAVPF-SFAMTVRDGDFQDLKGAKVIIISAGVNQKPGETRLQLLERNANIFRDIVPKVVAIESNAVIVVATNPVDILTSLTEQLAGLPEGQVMGSGTTLD 145          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: MDH_THERP (Malate dehydrogenase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTG 551
            K+S+IG G VG   AQ +  ++ + +L LVD   +  +G+ LDL  A   L    +I+ S  Y  TAGSD+ ++T+G+ +  G              +++       SPD ++++V NP+D +  VA   SG P   V G
Sbjct:    4 KVSIIGAGAVGATTAQYLAARN-IADLVLVDIVENLPQGKALDLLEAGPVLGYDCQIVGSNSYDATAGSDVIVITSGSPRKPGMSRDDLLRVNMNIVRSVTEQAAPLSPDAVIIVVTNPLDAMCHVALEASGFPPARVVG 142          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_THET8 (L-lactate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ldh PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.646e-11
Identity = 43/156 (27.56%), Postives = 71/156 (45.51%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLN-LIQDY 599
            K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A   Y    G+   ++ AG  Q  GE            F  ++P +++ +P+ +LL+  NP+D++  VA  LSG P   V GS   L+ +    L+ +Y
Sbjct:    2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG-SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEY 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: MDH_RICBR (Malate dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 47/166 (28.31%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  123 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLN--LIQDYKLNS 611
            K++ KI +IG+GN+G  +A  I  ++ + ++ L D      +G+ LD+  A        KI  + DY    GSD  I+TAG  +  G              K++   + KY+P+  ++++ NP+D++  V    SG P N V G    L+ S  N  L +++K+++
Sbjct:    2 KKNPKILLIGSGNIGGTLAHLISLKN-LGDIVLFDVAEGIPQGKALDIMQANTLAGSDIKIKGTNDYKDIEGSDAIIITAGLPRKPGMSRDDLISVNTGIMKSVAENVKKYAPNAFVIVITNPLDVMVYVMLKESGLPHNKVIGMAGVLDSSRFNFFLAEEFKVST 166          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_THET2 (L-lactate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ldh PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.374e-11
Identity = 40/140 (28.57%), Postives = 64/140 (45.71%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGS 554
            K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A   Y    G+   ++ AG  Q  GE            F  ++P +++ +P+ +LL+  NP+D++  VA  LSG P   V GS
Sbjct:    2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG-SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYRLSGLPPGRVVGS 140          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDH_CHLT34.323e-1127.59L-lactate dehydrogenase OS=Chloroherpeton thalassi... [more]
MDH_THERP5.646e-1131.43Malate dehydrogenase OS=Thermomicrobium roseum (st... [more]
LDH_THET85.646e-1127.56L-lactate dehydrogenase OS=Thermus thermophilus (s... [more]
MDH_RICBR7.374e-1128.31Malate dehydrogenase OS=Rickettsia bellii (strain ... [more]
LDH_THET27.374e-1128.57L-lactate dehydrogenase OS=Thermus thermophilus (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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