DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CHIRA (L-lactate dehydrogenase A chain OS=Chionodraco rastrospinosus GN=ldha PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_CHAAC (L-lactate dehydrogenase A chain OS=Chaenocephalus aceratus GN=ldha PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_ALLMI (L-lactate dehydrogenase A chain OS=Alligator mississippiensis GN=LDHA PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 5.607e-35
Identity = 82/164 (50.00%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++  DY+VTA S L I+TAGARQ  GE            FK IIP +VK+SPDC LL+V NP+DI   VA  +SG P + V GS  NL+ +    +   +L  ++L
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVVEDKLRGEMLDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKHSPDCKLLVVSNPVDIWTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGERLGIHSL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PARMG (L-lactate dehydrogenase A chain OS=Paranotothenia magellanica GN=ldha PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 9.563e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSGNKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVLGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_HARAN (L-lactate dehydrogenase A chain OS=Harpagifer antarcticus GN=ldha PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 9.563e-35
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLN 608
            K I+H     P     K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DLQH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +VKYSP+CIL++V NP+DIL  VA  LSG P + V GS  NL+ +    +   KL+
Sbjct:    6 KLISHVMKEEPVGSRNKVTVVGVGMVGMASAISILIKDLGDELAMVDVMEDKLKGEVMDLQHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVLGSGTNLDSARFRHLIGEKLH 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_RABIT (L-lactate dehydrogenase A chain OS=Oryctolagus cuniculus GN=LDHA PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 1.631e-34
Identity = 81/162 (50.00%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LL+V NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHAL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PYTRG (L-lactate dehydrogenase A chain OS=Python regius GN=LDHA PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 1.631e-34
Identity = 83/164 (50.61%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEMLDLQH + FL   KI++  DYAVTA S L I+TAGARQ  GE            FK IIP +VKYSP C LL+V NP+DIL  VA  +SG P + V GS  NL+ +    +   +L  + L
Sbjct:   20 HNKITVVGVGAVGMACAISILMKDLADELALVDVVEDKLKGEMLDLQHGSLFLRTPKIVSGKDYAVTAHSKLVIITAGARQQEGEFRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKHRVIGSGCNLDSARFRHLLGERLGIHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_SCEWO (L-lactate dehydrogenase B chain OS=Sceloporus woodi GN=LDHB PE=2 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 2.131e-34
Identity = 82/173 (47.40%), Postives = 107/173 (61.85%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K I   A P+ T+  +K++V+G G VGMA A ++L +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP +VKYSPDCI+L+V NP+DIL  V   LSG P + V GS  NL+ +    +   +L
Sbjct:    7 KLITPVAQPA-TQPTSKVTVVGVGQVGMACAISVLEKGLCDELALVDVLEDKLKGEMMDLQHGSLFLKTNKIVAGKDYAVTANSKVVVVTAGVRQQEGESRLDLVQRNVNVFKFIIPQVVKYSPDCIILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRFLMGERL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PIG (L-lactate dehydrogenase A chain OS=Sus scrofa GN=LDHA PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 2.131e-34
Identity = 79/164 (48.17%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            H KI+V+G G VGMA A +IL ++  +E+ALVD   DKL+GEM+DLQH + FL   KI++  DY VTA S L ++TAGARQ  GE            FK IIP +VKYSP+C LL+V NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   20 HNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_MACFA (L-lactate dehydrogenase A chain OS=Macaca fascicularis GN=LDHA PE=2 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 2.131e-34
Identity = 81/162 (50.00%), Postives = 103/162 (63.58%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  DY+VTA S L I+TAGARQ  GE            FK I+P +VKYSP+C LLIV NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIVPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 183          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHA_CHIRA5.607e-3547.13L-lactate dehydrogenase A chain OS=Chionodraco ras... [more]
LDHA_CHAAC5.607e-3547.13L-lactate dehydrogenase A chain OS=Chaenocephalus ... [more]
LDHA_ALLMI5.607e-3550.00L-lactate dehydrogenase A chain OS=Alligator missi... [more]
LDHA_PARMG9.563e-3547.13L-lactate dehydrogenase A chain OS=Paranotothenia ... [more]
LDHA_HARAN9.563e-3547.13L-lactate dehydrogenase A chain OS=Harpagifer anta... [more]
LDHA_RABIT1.631e-3450.00L-lactate dehydrogenase A chain OS=Oryctolagus cun... [more]
LDHA_PYTRG1.631e-3450.61L-lactate dehydrogenase A chain OS=Python regius G... [more]
LDHB_SCEWO2.131e-3447.40L-lactate dehydrogenase B chain OS=Sceloporus wood... [more]
LDHA_PIG2.131e-3448.17L-lactate dehydrogenase A chain OS=Sus scrofa GN=L... [more]
LDHA_MACFA2.131e-3450.00L-lactate dehydrogenase A chain OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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